The configuration seems fine and the hdf5 message are not related to the MPI execution.

Can you clarify a bit what you mean by “see a mess”? How do you run the mpi application?

Michele

-- ETH Zurich Michele Dolfi Institute for Theoretical Physics HIT G 32.4 Wolfgang-Pauli-Str. 27 8093 Zurich Switzerland

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On Oct 29, 2016, at 9:42 PM, Tadeusz Wasiutyński tadeusz.wasiutynski@gmail.com wrote:

Hello, I met the problem on my CENTOS 7 installed on station with 24 threads. After:

~/opt/bin/cmake -D Boost_ROOT_DIR:PATH=~/alps-2.2.b4-src-with-boost/boost/ -D MPI_C_LIBRARIES=/usr/lib64/openmpi/libmpi.so -D MPI_C_INCLUDE_PATH=/usr/lib64/openmpi/include/ -D MPI_CXX_INCLUDE_PATH=/usr/lib64/openmpi/include -D LPSolve_LIBRARY=/usr/lib64/liblpsolve55.so -D LPSolve_INCLUDE_DIR=/usr/include/lpsolve/ -D HDF5_LIBRARIES=~/opt/lib/libhdf5.so -D HDF5_INCLUDE_DIR=~/opt/include/ -D SZIP_LIBRARIES=/usr/lib64/lib/libsz.so -D SZIP_INCLUDE_DIRS=/usr/lib64/include/ ~/alps-2.2.b4-src-with-boost/alps/

I receive:

---- Compiler version: c++ (GCC) 4.8.5 20150623 (Red Hat 4.8.5-4) -- Build type: Release -- Python interpreter /usr/bin/python -- Python interpreter ok : version 2. PYTHON_INCLUDE_DIRS = /usr/include/python2.7 -- PYTHON_NUMPY_INCLUDE_DIR = /usr/lib64/python2.7/site-packages/numpy/core/include -- PYTHON_SITE_PKG = /usr/lib/python2.7/site-packages -- PYTHON_LIBRARY = /usr/lib64/python2.7/config/libpython2.7.so http://libpython2.7.so/ -- PYTHON_EXTRA_LIBS =-lpthread -ldl -lutil -- PYTHON_LINK_FOR_SHARED = -Xlinker -export-dynamic -- ALPS version: 2.2.b4 -- Looking for Boost Source -- Found Boost Source: /home/twasiutynsk/alps-2.2.b4-src-with-boost/boost -- Boost Version: 1_58_0 -- Adding Boost dir: /home/twasiutynsk/alps-2.2.b4-src-with-boost/boost -- MPI compiler was /usr/lib64/openmpi/bin/mpicxx -- Falling back to CMake provied LAPACK/BLAS detection. -- A library with BLAS API found. -- A library with BLAS API found. -- A library with LAPACK API found. -- SQLite Library: not found -- Could NOT find SZIP (missing: SZIP_LIBRARIES SZIP_INCLUDE_DIRS) -- HDF5 without THREADSAFE mode. ALPS will ensure thread safety by HDF5 running sequentially. -- Python interpreter /usr/bin/python -- Python interpreter ok : version 2.7.5 -- PYTHON_INCLUDE_DIRS = /usr/include/python2.7 -- PYTHON_NUMPY_INCLUDE_DIR = /usr/lib64/python2.7/site-packages/numpy/core/include -- PYTHON_SITE_PKG = /usr/lib/python2.7/site-packages -- PYTHON_LIBRARY = /usr/lib64/python2.7/config/libpython2.7.so http://libpython2.7.so/ -- PYTHON_EXTRA_LIBS =-lpthread -ldl -lutil -- PYTHON_LINK_FOR_SHARED = -Xlinker -export-dynamic -- Numpy include in /usr/lib64/python2.7/site-packages/numpy/core/include -- ALPS XML dir is /opt/alps/lib/xml -- HDF5 without THREADSAFE mode. ALPS will ensure thread safety by HDF5 running sequentially. -- MPS: enabling NU1 symmetry. -- HDF5 without THREADSAFE mode. ALPS will ensure thread safety by HDF5 running sequentially. -- tebd will not be built -- HDF5 without THREADSAFE mode. ALPS will ensure thread safety by HDF5 running sequentially. -- Configuring done -- Generating done -- Build files have been written to: /home/twasiutynsk/build

in ccmake I see MPI ON. make and make tests (all passed) go smoothly. In tutorial runs I see however mess with MPI=24 while everything goes OK with MPI=1. Is something wrong in my HDF5?

In docker hub I found dolfim/alps but could not run probably because of some path problems. Anyone did it successfully? Regards 

-- Tadeusz Wasiutyński

-- Tadeusz Wasiutyński

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