problem compiling alps-2.2.b4 - Comp-phys-alps-users

24 Jul 2016


      In the past I had no problems with compiling alps from source. Recently I
tried to compile it on Fedora 24 and failed. I noticed that the source does
not like boost 1.6 from Fedora, used native 1.58 from alps. Cmake result
looks good but make fails:
cmake -D Boost_ROOT_DIR:PATH=~/alps-2.2.b4-src-with-boost/boost/
-DCMAKE_INSTALL_PREFIX=$HOME/ALPS/
LPSolve_LIBRARY=/usr/lib64/liblpsolve55.so -D
LPSolve_INCLUDE_DIR=/usr/include/lpsolve/ -D
HDF5_LIBRARIES=/usr/lib64/libhdf5.so -D HDF5_INCLUDE_DIR=/usr/include/
~/alps-2.2.b4-src-with-boost/alps/
-- Compiler version: c++ (GCC) 6.1.1 20160621 (Red Hat 6.1.1-3)
-- Build type: Release
-- Python interpreter /usr/bin/python
-- Python interpreter ok : version 2.7.12
-- PYTHON_INCLUDE_DIRS =  /usr/include/python2.7
-- PYTHON_NUMPY_INCLUDE_DIR =
/usr/lib64/python2.7/site-packages/numpy/core/include
-- PYTHON_SITE_PKG = /usr/lib/python2.7/site-packages
-- PYTHON_LIBRARY = /usr/lib64/python2.7/config/libpython2.7.so
-- PYTHON_EXTRA_LIBS =-lpthread -ldl  -lutil
-- PYTHON_LINK_FOR_SHARED =  -Xlinker -export-dynamic
-- ALPS version: 2.2.b4
-- Looking for Boost Source
-- Found Boost Source: /home/tadeusz/alps-2.2.b4-src-with-boost/boost
-- Boost Version: 1_58_0
-- Adding Boost dir: /home/tadeusz/alps-2.2.b4-src-with-boost/boost
-- Could NOT find MPI_C (missing:  MPI_C_LIBRARIES MPI_C_INCLUDE_PATH)
-- Could NOT find MPI_CXX (missing:  MPI_CXX_LIBRARIES
MPI_CXX_INCLUDE_PATH)
-- MPI compiler was
-- Falling back to CMake provied LAPACK/BLAS detection.
-- A library with BLAS API found.
-- A library with BLAS API found.
-- A library with LAPACK API found.
-- Could NOT find SZIP (missing:  SZIP_LIBRARIES SZIP_INCLUDE_DIRS)
-- Python interpreter /usr/bin/python
-- Python interpreter ok : version 2.7.12
-- PYTHON_INCLUDE_DIRS =  /usr/include/python2.7
-- PYTHON_NUMPY_INCLUDE_DIR =
/usr/lib64/python2.7/site-packages/numpy/core/include
-- PYTHON_SITE_PKG = /usr/lib/python2.7/site-packages
-- PYTHON_LIBRARY = /usr/lib64/python2.7/config/libpython2.7.so
-- PYTHON_EXTRA_LIBS =-lpthread -ldl  -lutil
-- PYTHON_LINK_FOR_SHARED =  -Xlinker -export-dynamic
-- Numpy include in /usr/lib64/python2.7/site-packages/numpy/core/include
-- ALPS XML dir is /home/tadeusz/ALPS/lib/xml
-- MPS: enabling NU1 symmetry.
-- tebd will not be built
-- Configuring done
-- Generating done
-- Build files have been written to: /home/tadeusz/build
make result:
[ 65%] Building CXX object
applications/dmrg/dmrg/CMakeFiles/dmrg.dir/dmrg.C.o
In file included from /usr/include/python2.7/pyconfig.h:6:0,
                 from
/home/tadeusz/alps-2.2.b4-src-with-boost/boost/boost/python/detail/wrap_python.hpp:50,
                 from
/home/tadeusz/alps-2.2.b4-src-with-boost/boost/boost/python/detail/prefix.hpp:13,
                 from
/home/tadeusz/alps-2.2.b4-src-with-boost/boost/boost/python/args.hpp:8,
                 from
/home/tadeusz/alps-2.2.b4-src-with-boost/boost/boost/python.hpp:11,
                 from
/home/tadeusz/alps-2.2.b4-src-with-boost/alps/src/alps/alea/mcdata.hpp:79,
                 from
/home/tadeusz/alps-2.2.b4-src-with-boost/alps/src/alps/alea.h:34,
                 from
/home/tadeusz/alps-2.2.b4-src-with-boost/alps/src/alps/alea/observableset.h:49,
                 from
/home/tadeusz/alps-2.2.b4-src-with-boost/alps/src/alps/scheduler/montecarlo.h:40,
                 from
/home/tadeusz/alps-2.2.b4-src-with-boost/alps/src/alps/scheduler.h:31,
                 from
/home/tadeusz/alps-2.2.b4-src-with-boost/alps/applications/dmrg/dmrg/dmrg.C:31:
/usr/include/python2.7/pyconfig-64.h:1202:0: warning: "_POSIX_C_SOURCE"
redefined
 #define _POSIX_C_SOURCE 200112L
 ---------------------------------------------
In file included from /usr/include/c++/6.1.1/memory:81:0,
                 from
/home/tadeusz/alps-2.2.b4-src-with-boost/boost/boost/smart_ptr/scoped_ptr.hpp:21,
                 from
/home/tadeusz/alps-2.2.b4-src-with-boost/boost/boost/scoped_ptr.hpp:14,
                 from
/home/tadeusz/alps-2.2.b4-src-with-boost/boost/boost/smart_ptr.hpp:19,
                 from
/home/tadeusz/alps-2.2.b4-src-with-boost/alps/src/alps/osiris/dump.h:38,
                 from
/home/tadeusz/alps-2.2.b4-src-with-boost/alps/src/alps/scheduler/info.h:38,
                 from
/home/tadeusz/alps-2.2.b4-src-with-boost/alps/src/alps/scheduler/worker.h:35,
                 from
/home/tadeusz/alps-2.2.b4-src-with-boost/alps/src/alps/scheduler/task.h:41,
                 from
/home/tadeusz/alps-2.2.b4-src-with-boost/alps/src/alps/scheduler/factory.h:34,
                 from
/home/tadeusz/alps-2.2.b4-src-with-boost/alps/applications/dmrg/dmrg/factory.h:31,
                 from
/home/tadeusz/alps-2.2.b4-src-with-boost/alps/applications/dmrg/dmrg/factory.C:30:
/usr/include/c++/6.1.1/bits/unique_ptr.h:49:28: note: declared here
   template<typename> class auto_ptr;
                            ^~~~~~~~
applications/dmrg/dmrg/CMakeFiles/dmrg.dir/build.make:86: for
'applications/dmrg/dmrg/CMakeFiles/dmrg.dir/factory.C.o' failed
make[2]: *** [applications/dmrg/dmrg/CMakeFiles/dmrg.dir/factory.C.o] error
1
CMakeFiles/Makefile2:6096: polecenia dla obiektu
'applications/dmrg/dmrg/CMakeFiles/dmrg.dir/all' failed
make[1]: *** [applications/dmrg/dmrg/CMakeFiles/dmrg.dir/all] error 2
Makefile:160: polecenia dla obiektu 'all' failed
make: *** [all] error 2
Any suggestions?
Regards
-- 
Tadeusz Wasiutyński