Sorry, I have 2.0.0b2. Running the first mc tutorial in my install directory, which is gien to vistrails (opt/alps/bin), I see the following in the small dump screen in the lower right corner
selimthegrim@Rimsky-Korsakoffee:~/vistrails-src-1.5-rev1832/vistrails$ python vistrails.py Initializing basic_modules Initializing persistence Initializing vtlcreator Initializing pythonCalc Initializing spreadsheet Loading Spreadsheet widgets... ==> Successfully import <Basic Widgets> ==> Successfully import <WebKit Viewer> ==> Successfully import <Image Viewer> ==> Successfully import <HTML Viewer> ==> Successfully import <SVG Widgets> Initializing controlflow Initializing HTTP Initializing webServices /home/selimthegrim/vistrails-src-1.5-rev1832/vistrails/core/modules/package.py:248: DeprecationWarning: the multifile module has been deprecated since Python 2.5 (name, globals, locals, fromlist, level)) Initializing pylab Initializing alps use_python_source and hidden ports is currently not possible use_python_source and hidden ports is currently not possible use_python_source and hidden ports is currently not possible use_python_source and hidden ports is currently not possible Initializing dialogs Initializing vtk Initializing abstraction EXCEPTION Pipeline cannot be instantiated: Missing version 0.6.0 of package org.comp-phys.alps Missing version 0.6.0 of package org.comp-phys.alps Missing version 0.6.0 of package org.comp-phys.alps Missing version 0.6.0 of package org.comp-phys.alps Missing version 0.6.0 of package org.comp-phys.alps Missing version 0.6.0 of package org.comp-phys.alps Missing version 0.6.0 of package org.comp-phys.alps Missing version 0.6.0 of package org.comp-phys.alps Missing version 1.4.2 of package edu.utah.sci.vistrails.basic Missing version 0.6.0 of package org.comp-phys.alps Missing version 0.6.0 of package org.comp-phys.alps Missing version 0.6.0 of package org.comp-phys.alps Missing version 0.6.0 of package org.comp-phys.alps Missing version 0.6.0 of package org.comp-phys.alps Missing version 0.6.0 of package org.comp-phys.alps Missing version 0.6.0 of package org.comp-phys.alps Missing version 0.6.0 of package org.comp-phys.alps Missing version 0.6.0 of package org.comp-phys.alps Missing version 0.6.0 of package org.comp-phys.alps Missing version 0.6.0 of package org.comp-phys.alps Missing version 0.6.0 of package org.comp-phys.alps Missing version 0.6.0 of package org.comp-phys.alps running handle_invalid_pipeline --- trying to fix Missing version 0.6.0 of package org.comp-phys.alps --- trying to fix Missing version 0.6.0 of package org.comp-phys.alps --- trying to fix Missing version 0.6.0 of package org.comp-phys.alps --- trying to fix Missing version 0.6.0 of package org.comp-phys.alps --- trying to fix Missing version 0.6.0 of package org.comp-phys.alps --- trying to fix Missing version 0.6.0 of package org.comp-phys.alps --- trying to fix Missing version 0.6.0 of package org.comp-phys.alps --- trying to fix Missing version 0.6.0 of package org.comp-phys.alps --- trying to fix Missing version 1.4.2 of package edu.utah.sci.vistrails.basic --- trying to fix Missing version 0.6.0 of package org.comp-phys.alps --- trying to fix Missing version 0.6.0 of package org.comp-phys.alps --- trying to fix Missing version 0.6.0 of package org.comp-phys.alps --- trying to fix Missing version 0.6.0 of package org.comp-phys.alps --- trying to fix Missing version 0.6.0 of package org.comp-phys.alps --- trying to fix Missing version 0.6.0 of package org.comp-phys.alps --- trying to fix Missing version 0.6.0 of package org.comp-phys.alps --- trying to fix Missing version 0.6.0 of package org.comp-phys.alps --- trying to fix Missing version 0.6.0 of package org.comp-phys.alps --- trying to fix Missing version 0.6.0 of package org.comp-phys.alps --- trying to fix Missing version 0.6.0 of package org.comp-phys.alps --- trying to fix Missing version 0.6.0 of package org.comp-phys.alps --- trying to fix Missing version 0.6.0 of package org.comp-phys.alps +++ trying to fix Missing version 0.6.0 of package org.comp-phys.alps +++ trying to fix Missing version 0.6.0 of package org.comp-phys.alps +++ trying to fix Missing version 0.6.0 of package org.comp-phys.alps +++ trying to fix Missing version 0.6.0 of package org.comp-phys.alps +++ trying to fix Missing version 0.6.0 of package org.comp-phys.alps +++ trying to fix Missing version 0.6.0 of package org.comp-phys.alps +++ trying to fix Missing version 0.6.0 of package org.comp-phys.alps +++ trying to fix Missing version 0.6.0 of package org.comp-phys.alps +++ trying to fix Missing version 1.4.2 of package edu.utah.sci.vistrails.basic +++ trying to fix Missing version 0.6.0 of package org.comp-phys.alps +++ trying to fix Missing version 0.6.0 of package org.comp-phys.alps +++ trying to fix Missing version 0.6.0 of package org.comp-phys.alps +++ trying to fix Missing version 0.6.0 of package org.comp-phys.alps +++ trying to fix Missing version 0.6.0 of package org.comp-phys.alps +++ trying to fix Missing version 0.6.0 of package org.comp-phys.alps +++ trying to fix Missing version 0.6.0 of package org.comp-phys.alps +++ trying to fix Missing version 0.6.0 of package org.comp-phys.alps +++ trying to fix Missing version 0.6.0 of package org.comp-phys.alps +++ trying to fix Missing version 0.6.0 of package org.comp-phys.alps +++ trying to fix Missing version 0.6.0 of package org.comp-phys.alps +++ trying to fix Missing version 0.6.0 of package org.comp-phys.alps +++ trying to fix Missing version 0.6.0 of package org.comp-phys.alps ** trying to fix errors in org.comp-phys.alps default upgrades running module_upgrade_request Convert2XML running module_upgrade_request WriteInputFiles in_remap: WriteInputFiles running module_upgrade_request SimulationName running module_upgrade_request SetLabels in_remap: SetLabels running module_upgrade_request RunSpinMC running module_upgrade_request LatticeModel in_remap: LatticeModel running module_upgrade_request ShowListOfPlots running module_upgrade_request GetCloneFiles running module_upgrade_request Legend running module_upgrade_request Temperature running module_upgrade_request Parameter in_remap: Parameter running module_upgrade_request SquareLattice running module_upgrade_request ClassicalMonteCarloParameters running module_upgrade_request ShowListOfHTMLFiles running module_upgrade_request IterateValue running module_upgrade_request PrepareMonteCarlo running module_upgrade_request ConvertXML2HTML running module_upgrade_request TextCell running module_upgrade_request LoadBinningAnalysis running module_upgrade_request GetResultFiles running module_upgrade_request ClassicalIsingModel ** trying to fix errors in edu.utah.sci.vistrails.basic default upgrades VisTrails 2010-07-16 08:13:46,713 CRITICAL: File '/home/selimthegrim/vistrails-src-1.5-rev1832/vistrails/core/upgradeworkflow.py' at line 67: Package cannot handle upgrade request. VisTrails will attempt automatic upgrade. EXCEPTION Pipeline cannot be instantiated: Missing version 0.6.0 of package org.comp-phys.alps Missing version 0.6.0 of package org.comp-phys.alps Missing version 0.6.0 of package org.comp-phys.alps Missing version 0.6.0 of package org.comp-phys.alps Missing version 0.6.0 of package org.comp-phys.alps Missing version 0.6.0 of package org.comp-phys.alps Missing version 0.6.0 of package org.comp-phys.alps Missing version 0.6.0 of package org.comp-phys.alps Missing version 1.4.2 of package edu.utah.sci.vistrails.basic Missing version 0.6.0 of package org.comp-phys.alps Missing version 0.6.0 of package org.comp-phys.alps Missing version 0.6.0 of package org.comp-phys.alps Missing version 0.6.0 of package org.comp-phys.alps Missing version 0.6.0 of package org.comp-phys.alps Missing version 0.6.0 of package org.comp-phys.alps Missing version 0.6.0 of package org.comp-phys.alps Missing version 0.6.0 of package org.comp-phys.alps Missing version 0.6.0 of package org.comp-phys.alps Missing version 0.6.0 of package org.comp-phys.alps Missing version 0.6.0 of package org.comp-phys.alps Missing version 0.6.0 of package org.comp-phys.alps Missing version 0.6.0 of package org.comp-phys.alps running handle_invalid_pipeline --- trying to fix Missing version 0.6.0 of package org.comp-phys.alps --- trying to fix Missing version 0.6.0 of package org.comp-phys.alps --- trying to fix Missing version 0.6.0 of package org.comp-phys.alps --- trying to fix Missing version 0.6.0 of package org.comp-phys.alps --- trying to fix Missing version 0.6.0 of package org.comp-phys.alps --- trying to fix Missing version 0.6.0 of package org.comp-phys.alps --- trying to fix Missing version 0.6.0 of package org.comp-phys.alps --- trying to fix Missing version 0.6.0 of package org.comp-phys.alps --- trying to fix Missing version 1.4.2 of package edu.utah.sci.vistrails.basic --- trying to fix Missing version 0.6.0 of package org.comp-phys.alps --- trying to fix Missing version 0.6.0 of package org.comp-phys.alps --- trying to fix Missing version 0.6.0 of package org.comp-phys.alps --- trying to fix Missing version 0.6.0 of package org.comp-phys.alps --- trying to fix Missing version 0.6.0 of package org.comp-phys.alps --- trying to fix Missing version 0.6.0 of package org.comp-phys.alps --- trying to fix Missing version 0.6.0 of package org.comp-phys.alps --- trying to fix Missing version 0.6.0 of package org.comp-phys.alps --- trying to fix Missing version 0.6.0 of package org.comp-phys.alps --- trying to fix Missing version 0.6.0 of package org.comp-phys.alps --- trying to fix Missing version 0.6.0 of package org.comp-phys.alps --- trying to fix Missing version 0.6.0 of package org.comp-phys.alps --- trying to fix Missing version 0.6.0 of package org.comp-phys.alps +++ trying to fix Missing version 0.6.0 of package org.comp-phys.alps +++ trying to fix Missing version 0.6.0 of package org.comp-phys.alps +++ trying to fix Missing version 0.6.0 of package org.comp-phys.alps +++ trying to fix Missing version 0.6.0 of package org.comp-phys.alps +++ trying to fix Missing version 0.6.0 of package org.comp-phys.alps +++ trying to fix Missing version 0.6.0 of package org.comp-phys.alps +++ trying to fix Missing version 0.6.0 of package org.comp-phys.alps +++ trying to fix Missing version 0.6.0 of package org.comp-phys.alps +++ trying to fix Missing version 1.4.2 of package edu.utah.sci.vistrails.basic +++ trying to fix Missing version 0.6.0 of package org.comp-phys.alps +++ trying to fix Missing version 0.6.0 of package org.comp-phys.alps +++ trying to fix Missing version 0.6.0 of package org.comp-phys.alps +++ trying to fix Missing version 0.6.0 of package org.comp-phys.alps +++ trying to fix Missing version 0.6.0 of package org.comp-phys.alps +++ trying to fix Missing version 0.6.0 of package org.comp-phys.alps +++ trying to fix Missing version 0.6.0 of package org.comp-phys.alps +++ trying to fix Missing version 0.6.0 of package org.comp-phys.alps +++ trying to fix Missing version 0.6.0 of package org.comp-phys.alps +++ trying to fix Missing version 0.6.0 of package org.comp-phys.alps +++ trying to fix Missing version 0.6.0 of package org.comp-phys.alps +++ trying to fix Missing version 0.6.0 of package org.comp-phys.alps +++ trying to fix Missing version 0.6.0 of package org.comp-phys.alps ** trying to fix errors in org.comp-phys.alps default upgrades running module_upgrade_request Convert2XML running module_upgrade_request WriteInputFiles in_remap: WriteInputFiles running module_upgrade_request SimulationName running module_upgrade_request SetLabels in_remap: SetLabels running module_upgrade_request RunSpinMC running module_upgrade_request LatticeModel in_remap: LatticeModel running module_upgrade_request ShowListOfPlots running module_upgrade_request GetCloneFiles running module_upgrade_request Legend running module_upgrade_request Temperature running module_upgrade_request Parameter in_remap: Parameter running module_upgrade_request SquareLattice running module_upgrade_request ClassicalMonteCarloParameters running module_upgrade_request ShowListOfHTMLFiles running module_upgrade_request IterateValue running module_upgrade_request PrepareMonteCarlo running module_upgrade_request ConvertXML2HTML running module_upgrade_request TextCell running module_upgrade_request LoadBinningAnalysis running module_upgrade_request GetResultFiles running module_upgrade_request ClassicalIsingModel ** trying to fix errors in edu.utah.sci.vistrails.basic default upgrades VisTrails 2010-07-16 08:13:46,852 CRITICAL: File '/home/selimthegrim/vistrails-src-1.5-rev1832/vistrails/core/upgradeworkflow.py' at line 67: Package cannot handle upgrade request. VisTrails will attempt automatic upgrade. /opt/alps/bin/spinmc --Tmin 5 --write-xml /tmp/vt_tmphTz4iM/vt_tmpW15EOF/cluster.in.xml >& /tmp/vt_tmphTz4iM/vt_tmpEMnSUB.log sh: Syntax error: Bad fd number sh: Syntax error: Bad fd number sh: Syntax error: Bad fd number sh: Syntax error: Bad fd number VisTrails 2010-07-16 08:21:36,123 CRITICAL: File '/home/selimthegrim/vistrails-src-1.5-rev1832/vistrails/core/upgradeworkflow.py' at line 67: Package cannot handle upgrade request. VisTrails will attempt automatic upgrade. VisTrails 2010-07-16 08:21:37,576 CRITICAL: File '/home/selimthegrim/vistrails-src-1.5-rev1832/vistrails/core/upgradeworkflow.py' at line 67: Package cannot handle upgrade request. VisTrails will attempt automatic upgrade. sh: Syntax error: Bad fd number
mentioned logfiles are empty, and preferences say orgs.comp-phys.alps is 0.7.0!
On Fri, Jul 16, 2010 at 7:16 AM, Matthias Troyer troyer@phys.ethz.ch wrote
I assume you mean the first beta release 2.0.0b1. That one will only work with the tutorial files included with 2.0.0b1. The files from the web page require the latest release 2.0.0b2 or a nightly snapshot.
About your execution problems the most likely reason is that you did not set up the path to the ALPS executables in Vistrails. To do so choose Preferences from the Edit menu, click on the packages tab, select alps from the package list and click configure. Then change the alpspath variable to point to the location of the ALPS executables.
Matthias
On 16 Jul 2010, at 01:54, Noah Rahman wrote:
Ubuntu lucid, alps 2.0.1. I specified the vistrails directory in the also
configure script; should I be telling vistrails something? I see all the alps functions on the left hand side.
Sent from my iPhone
On Jul 15, 2010, at 9:49 PM, Matthias Troyer troyer@phys.ethz.ch
wrote:
On 15 Jul 2010, at 21:18, Noah Rahman wrote:
Vistrails recognizes the ALPS extensions, but I couldn't make it
recognize the Ising simulation as an additional package in the first set of tutorials. It seemed that the tutorial script wants the 0.6.0 version of orgs.comp-phys.alps packages and ALPS 2.0 has version 0.7.0? I grepped and replaced it and the same issue remained
I just tried this on my machine and all works. VT should automatically
upgrade 0.6 to 0.7. What version of ALPS do you use and on which OS?
Matthias Troyer