Hi,
I'm trying to build alps 2.0 (current nightly snapshot, with boost) on Ubuntu Lucid. I got all the dependencies and ran cmake (version 2.8.0-5), pointing to the alps and boost directories. Then I ran make and got the following error:
... [ 26%] Building CXX object src/boost/CMakeFiles/boost.dir/root/alps2/alps-src/boost/libs/thread/src/pthread/once.cpp.o [ 26%] Building CXX object src/boost/CMakeFiles/boost.dir/root/alps2/alps-src/boost/libs/thread/src/pthread/thread.cpp.o Linking CXX shared library libboost.so /usr/bin/ld: /usr/local/lib/python2.7/config/libpython2.7.a(abstract.o): relocation R_X86_64_32 against `.rodata.str1.8' can not be used when making a shared object; recompile with -fPIC /usr/local/lib/python2.7/config/libpython2.7.a: could not read symbols: Bad value collect2: ld returned 1 exit status make[2]: *** [src/boost/libboost.so] Error 1 make[1]: *** [src/boost/CMakeFiles/boost.dir/all] Error 2 make: *** [all] Error 2
Do you know what this could be?
Below I also attach the printout from the cmake command. Note I will not use MPI.
Thanks, Itamar
cmake printout:
-- The C compiler identification is GNU -- The CXX compiler identification is GNU -- Check for working C compiler: /usr/bin/gcc -- Check for working C compiler: /usr/bin/gcc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Build type: Release -- Python interpreter /usr/local/bin/python -- Python interpreter ok : version 2.7.2 -- PYTHON_INCLUDE_DIRS = /usr/local/include/python2.7 -- PYTHON_NUMPY_INCLUDE_DIR = /usr/local/lib/python2.7/site-packages/numpy/core/include -- PYTHON_SITE_PKG = /usr/local/lib/python2.7/site-packages -- PYTHON_LIBRARY = /usr/local/lib/python2.7/config/libpython2.7.a -- PYTHON_EXTRA_LIBS =-lpthread -ldl -lutil -- PYTHON_LINK_FOR_SHARED = -Xlinker -export-dynamic -- ALPS version: 2.1.0d1 -- Looking for rpc/rpc.h -- Looking for rpc/rpc.h - found -- Looking for stdarg.h -- Looking for stdarg.h - found -- Looking for sys/stat.h -- Looking for sys/stat.h - found -- Looking for sys/systeminfo.h -- Looking for sys/systeminfo.h - not found -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for unistd.h -- Looking for unistd.h - found -- Looking for windows.h -- Looking for windows.h - not found -- Looking for C++ include valarray -- Looking for C++ include valarray - found -- Looking for Boost Source -- Found Boost Source: /root/alps2/alps-src/boost -- Boost Version: 1_47_0 -- Could NOT find MPI (missing: MPI_LIBRARY MPI_INCLUDE_PATH) -- MPI compiler was MPI_COMPILER-NOTFOUND -- The Fortran compiler identification is GNU -- Check for working Fortran compiler: /usr/bin/gfortran -- Check for working Fortran compiler: /usr/bin/gfortran -- works -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Checking whether /usr/bin/gfortran supports Fortran 90 -- Checking whether /usr/bin/gfortran supports Fortran 90 -- yes Falling back to CMake provied LAPACK/BLAS detection. -- Looking for Fortran sgemm -- Looking for Fortran sgemm - found -- Looking for include files CMAKE_HAVE_PTHREAD_H -- Looking for include files CMAKE_HAVE_PTHREAD_H - found -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- A library with BLAS API found. -- A library with BLAS API found. -- Looking for Fortran cheev -- Looking for Fortran cheev - found -- A library with LAPACK API found. -- Found SQLite Library: /usr/lib/libsqlite3.so -- Found FFTW: /usr/lib/libfftw3.so -- LPSolve Library: not found -- Found ZLIB: /usr/lib/libz.so -- Could NOT find SZIP (missing: SZIP_LIBRARIES SZIP_INCLUDE_DIRS) -- Found HDF5: debug;/usr/lib/libhdf5_hl.so;/usr/lib/libhdf5.so;/usr/lib/libpthread.so;/usr/lib/libz.so;/usr/lib/libm.so;optimized;/usr/lib/libhdf5_hl.so;/usr/lib/libhdf5.so;/usr/lib/libpthread.so;/usr/lib/libz.so;/usr/lib/libm.so -- HDF5 version found is 1.8.4 in /usr/include -- Python interpreter /usr/local/bin/python -- Python interpreter ok : version 2.7.2 -- PYTHON_INCLUDE_DIRS = /usr/local/include/python2.7 -- PYTHON_NUMPY_INCLUDE_DIR = /usr/local/lib/python2.7/site-packages/numpy/core/include -- PYTHON_SITE_PKG = /usr/local/lib/python2.7/site-packages -- PYTHON_LIBRARY = /usr/local/lib/python2.7/config/libpython2.7.a -- PYTHON_EXTRA_LIBS =-lpthread -ldl -lutil -- PYTHON_LINK_FOR_SHARED = -Xlinker -export-dynamic -- Numpy include in /usr/local/lib/python2.7/site-packages/numpy/core/include -- ALPS XML dir is /opt/alps/lib/xml -- Adding Boost dir: /root/alps2/alps-src/boost -- HDF5 version found is 1.8.4 in /usr/include -- HDF5 version found is 1.8.4 in /usr/include -- tebd will not be built -- CTest cannot determine repository type. Please set UPDATE_TYPE to 'cvs' or 'svn'. CTest update will not work. -- Configuring done -- Generating done -- Build files have been written to: /root/alps2 root@birge-521-6:~/alps2# cd build root@birge-521-6:~/alps2/build# cmake -D Boost_ROOT_DIR:PATH=/root/alps2/alps-src/boost /root/alps2/alps-src/alps -- The C compiler identification is GNU -- The CXX compiler identification is GNU -- Check for working C compiler: /usr/bin/gcc -- Check for working C compiler: /usr/bin/gcc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Build type: Release -- Python interpreter /usr/local/bin/python -- Python interpreter ok : version 2.7.2 -- PYTHON_INCLUDE_DIRS = /usr/local/include/python2.7 -- PYTHON_NUMPY_INCLUDE_DIR = /usr/local/lib/python2.7/site-packages/numpy/core/include -- PYTHON_SITE_PKG = /usr/local/lib/python2.7/site-packages -- PYTHON_LIBRARY = /usr/local/lib/python2.7/config/libpython2.7.a -- PYTHON_EXTRA_LIBS =-lpthread -ldl -lutil -- PYTHON_LINK_FOR_SHARED = -Xlinker -export-dynamic -- ALPS version: 2.1.0d1 -- Looking for rpc/rpc.h -- Looking for rpc/rpc.h - found -- Looking for stdarg.h -- Looking for stdarg.h - found -- Looking for sys/stat.h -- Looking for sys/stat.h - found -- Looking for sys/systeminfo.h -- Looking for sys/systeminfo.h - not found -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for unistd.h -- Looking for unistd.h - found -- Looking for windows.h -- Looking for windows.h - not found -- Looking for C++ include valarray -- Looking for C++ include valarray - found -- Looking for Boost Source -- Found Boost Source: /root/alps2/alps-src/boost -- Boost Version: 1_47_0 -- Could NOT find MPI (missing: MPI_LIBRARY MPI_INCLUDE_PATH) -- MPI compiler was MPI_COMPILER-NOTFOUND -- The Fortran compiler identification is GNU -- Check for working Fortran compiler: /usr/bin/gfortran -- Check for working Fortran compiler: /usr/bin/gfortran -- works -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Checking whether /usr/bin/gfortran supports Fortran 90 -- Checking whether /usr/bin/gfortran supports Fortran 90 -- yes Falling back to CMake provied LAPACK/BLAS detection. -- Looking for Fortran sgemm -- Looking for Fortran sgemm - found -- Looking for include files CMAKE_HAVE_PTHREAD_H -- Looking for include files CMAKE_HAVE_PTHREAD_H - found -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- A library with BLAS API found. -- A library with BLAS API found. -- Looking for Fortran cheev -- Looking for Fortran cheev - found -- A library with LAPACK API found. -- Found SQLite Library: /usr/lib/libsqlite3.so -- Found FFTW: /usr/lib/libfftw3.so -- LPSolve Library: not found -- Found ZLIB: /usr/lib/libz.so -- Could NOT find SZIP (missing: SZIP_LIBRARIES SZIP_INCLUDE_DIRS) -- Found HDF5: debug;/usr/lib/libhdf5_hl.so;/usr/lib/libhdf5.so;/usr/lib/libpthread.so;/usr/lib/libz.so;/usr/lib/libm.so;optimized;/usr/lib/libhdf5_hl.so;/usr/lib/libhdf5.so;/usr/lib/libpthread.so;/usr/lib/libz.so;/usr/lib/libm.so -- HDF5 version found is 1.8.4 in /usr/include -- Python interpreter /usr/local/bin/python -- Python interpreter ok : version 2.7.2 -- PYTHON_INCLUDE_DIRS = /usr/local/include/python2.7 -- PYTHON_NUMPY_INCLUDE_DIR = /usr/local/lib/python2.7/site-packages/numpy/core/include -- PYTHON_SITE_PKG = /usr/local/lib/python2.7/site-packages -- PYTHON_LIBRARY = /usr/local/lib/python2.7/config/libpython2.7.a -- PYTHON_EXTRA_LIBS =-lpthread -ldl -lutil -- PYTHON_LINK_FOR_SHARED = -Xlinker -export-dynamic -- Numpy include in /usr/local/lib/python2.7/site-packages/numpy/core/include -- ALPS XML dir is /opt/alps/lib/xml -- Adding Boost dir: /root/alps2/alps-src/boost -- HDF5 version found is 1.8.4 in /usr/include -- HDF5 version found is 1.8.4 in /usr/include -- tebd will not be built -- CTest cannot determine repository type. Please set UPDATE_TYPE to 'cvs' or 'svn'. CTest update will not work. -- Configuring done -- Generating done -- Build files have been written to: /root/alps2/build