I am getting errors when trying to compile Alps from source using gcc 4.8.1 and installed hdf5 through apt-get install libhdf5-serial-dev. I am using Ubuntu server 12.04 LTS. I also have openMPI 1.6.5 installed. Here is the error I am getting. -- The C compiler identification is GNU-- The CXX compiler identification is GNU-- Check for working C compiler: /storage/gcc/4.8.1/bin/gcc-- Check for working C compiler: /storage/gcc/4.8.1/bin/gcc -- works-- Detecting C compiler ABI info-- Detecting C compiler ABI info - done-- Check for working CXX compiler: /storage/gcc/4.8.1/bin/c++-- Check for working CXX compiler: /storage/gcc/4.8.1/bin/c++ -- works-- Detecting CXX compiler ABI info-- Detecting CXX compiler ABI info - done-- Build type: Release-- Python interpreter /usr/bin/python-- Python interpreter ok : version 2.7.3-- PYTHON_INCLUDE_DIRS = /usr/include/python2.7-- PYTHON_NUMPY_INCLUDE_DIR = /storage/numpy/1.7.0/lib/python2.7/site-packages/numpy/core/include-- PYTHON_SITE_PKG = /usr/lib/python2.7/dist-packages-- PYTHON_LIBRARY = /usr/lib/python2.7/config/libpython2.7.so-- PYTHON_EXTRA_LIBS =-lssl -lcrypto -lssl -lcrypto -L/usr/lib -lz -lpthread -ldl -lutil-- PYTHON_LINK_FOR_SHARED = -Xlinker -export-dynamic -Wl,-O1 -Wl,-Bsymbolic-functions-- ALPS version: 2.1.1-- Looking for rpc/rpc.h-- Looking for rpc/rpc.h - found-- Looking for stdarg.h-- Looking for stdarg.h - found-- Looking for sys/stat.h-- Looking for sys/stat.h - found-- Looking for sys/systeminfo.h-- Looking for sys/systeminfo.h - not found-- Looking for sys/types.h-- Looking for sys/types.h - found-- Looking for unistd.h-- Looking for unistd.h - found-- Looking for windows.h-- Looking for windows.h - not found-- Looking for C++ include valarray-- Looking for C++ include valarray - found-- Looking for Boost SourceCMake Error at config/FindBoostSrc.cmake:85 (file): file Internal CMake error when trying to open file: /root/Cluster/alps-2.1.1-r6176-src-with-boost/alps/./boost/boost/version.hpp for reading.Call Stack (most recent call first): config/FindBoostForALPS.cmake:61 (find_package) CMakeLists.txt:248 (find_package)
CMake Error at config/FindBoostSrc.cmake:90 (MATH): math cannot parse the expression: " / 100000": syntax error, unexpected exp_DIVIDE, expecting exp_OPENPARENT or exp_NUMBER (2)Call Stack (most recent call first): config/FindBoostForALPS.cmake:61 (find_package) CMakeLists.txt:248 (find_package)
CMake Error at config/FindBoostSrc.cmake:91 (MATH): math cannot parse the expression: " / 100 % 1000": syntax error, unexpected exp_DIVIDE, expecting exp_OPENPARENT or exp_NUMBER (2)Call Stack (most recent call first): config/FindBoostForALPS.cmake:61 (find_package) CMakeLists.txt:248 (find_package)
CMake Error at config/FindBoostSrc.cmake:92 (MATH): math cannot parse the expression: " % 100": syntax error, unexpected exp_MOD, expecting exp_OPENPARENT or exp_NUMBER (2)Call Stack (most recent call first): config/FindBoostForALPS.cmake:61 (find_package) CMakeLists.txt:248 (find_package)
-- Found Boost Source: ./boost-- Boost Version: __-- Found MPI_C: /storage/openmpi/1.6.5/lib/libmpi.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so;/usr/lib/x86_64-linux-gnu/librt.so;/usr/lib/x86_64-linux-gnu/libnsl.so;/usr/lib/x86_64-linux-gnu/libutil.so;/usr/lib/x86_64-linux-gnu/libm.so;/usr/lib/x86_64-linux-gnu/libdl.so -- Found MPI_CXX: /storage/openmpi/1.6.5/lib/libmpi_cxx.so;/storage/openmpi/1.6.5/lib/libmpi.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so;/usr/lib/x86_64-linux-gnu/librt.so;/usr/lib/x86_64-linux-gnu/libnsl.so;/usr/lib/x86_64-linux-gnu/libutil.so;/usr/lib/x86_64-linux-gnu/libm.so;/usr/lib/x86_64-linux-gnu/libdl.so -- MPI compiler was /storage/openmpi/1.6.5/bin/mpicxx-- The Fortran compiler identification is GNU-- Check for working Fortran compiler: /storage/gcc/4.8.1/bin/gfortran-- Check for working Fortran compiler: /storage/gcc/4.8.1/bin/gfortran -- works-- Detecting Fortran compiler ABI info-- Detecting Fortran compiler ABI info - done-- Checking whether /storage/gcc/4.8.1/bin/gfortran supports Fortran 90-- Checking whether /storage/gcc/4.8.1/bin/gfortran supports Fortran 90 -- yesFalling back to CMake provied LAPACK/BLAS detection.-- Looking for Fortran sgemm-- Looking for Fortran sgemm - found-- Looking for include files CMAKE_HAVE_PTHREAD_H-- Looking for include files CMAKE_HAVE_PTHREAD_H - found-- Looking for pthread_create in pthreads-- Looking for pthread_create in pthreads - not found-- Looking for pthread_create in pthread-- Looking for pthread_create in pthread - found-- Found Threads: TRUE -- A library with BLAS API found.-- A library with BLAS API found.-- Looking for Fortran cheev-- Looking for Fortran cheev - found-- A library with LAPACK API found.-- SQLite Library: not found-- Found FFTW: /usr/lib/libfftw3.so -- LPSolve Library: not found-- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so -- Could NOT find SZIP (missing: SZIP_LIBRARIES SZIP_INCLUDE_DIRS) -- Found HDF5: debug;/usr/lib/libhdf5_hl.so;/usr/lib/libhdf5.so;optimized;/usr/lib/libhdf5_hl.so;/usr/lib/libhdf5.so -- HDF5: /usr/include debug;/usr/lib/libhdf5_hl.so;/usr/lib/libhdf5.so;optimized;/usr/lib/libhdf5_hl.so;/usr/lib/libhdf5.so HDF5_DLL-NOTFOUND;HDF5_HL_DLL-NOTFOUND-- Python interpreter /usr/bin/python-- Python interpreter ok : version 2.7.3-- PYTHON_INCLUDE_DIRS = /usr/include/python2.7-- PYTHON_NUMPY_INCLUDE_DIR = /storage/numpy/1.7.0/lib/python2.7/site-packages/numpy/core/include-- PYTHON_SITE_PKG = /usr/lib/python2.7/dist-packages-- PYTHON_LIBRARY = /usr/lib/python2.7/config/libpython2.7.so-- PYTHON_EXTRA_LIBS =-lssl -lcrypto -lssl -lcrypto -L/usr/lib -lz -lpthread -ldl -lutil-- PYTHON_LINK_FOR_SHARED = -Xlinker -export-dynamic -Wl,-O1 -Wl,-Bsymbolic-functions-- Numpy include in /storage/numpy/1.7.0/lib/python2.7/site-packages/numpy/core/include-- ALPS XML dir is /storage/alps/2.1.1/lib/xml-- Adding Boost dir: ./boost -- HDF5: /usr/include debug;/usr/lib/libhdf5_hl.so;/usr/lib/libhdf5.so;optimized;/usr/lib/libhdf5_hl.so;/usr/lib/libhdf5.so HDF5_DLL-NOTFOUND;HDF5_HL_DLL-NOTFOUND;HDF5_DLL-NOTFOUND;HDF5_HL_DLL-NOTFOUND-- HDF5: /usr/include debug;/usr/lib/libhdf5_hl.so;/usr/lib/libhdf5.so;optimized;/usr/lib/libhdf5_hl.so;/usr/lib/libhdf5.so HDF5_DLL-NOTFOUND;HDF5_HL_DLL-NOTFOUND;HDF5_DLL-NOTFOUND;HDF5_HL_DLL-NOTFOUND-- tebd will not be built-- Configuring incomplete, errors occurred! At first glance I thought it was HDF5 so I installed from source. But I also realized I needed szip again I installed from source. Then I get this error. -- Build type: Release-- Python interpreter /usr/bin/python-- Python interpreter ok : version 2.7.3-- PYTHON_INCLUDE_DIRS = /usr/include/python2.7-- PYTHON_NUMPY_INCLUDE_DIR = /storage/numpy/1.7.0/lib/python2.7/site-packages/numpy/core/include-- PYTHON_SITE_PKG = /usr/lib/python2.7/dist-packages-- PYTHON_LIBRARY = /usr/lib/python2.7/config/libpython2.7.so-- PYTHON_EXTRA_LIBS =-lssl -lcrypto -lssl -lcrypto -L/usr/lib -lz -lpthread -ldl -lutil-- PYTHON_LINK_FOR_SHARED = -Xlinker -export-dynamic -Wl,-O1 -Wl,-Bsymbolic-functions-- ALPS version: 2.1.1-- Looking for Boost SourceCMake Error at config/FindBoostSrc.cmake:85 (file): file Internal CMake error when trying to open file: /root/Cluster/alps-2.1.1-r6176-src-with-boost/alps/./boost/boost/version.hpp for reading.Call Stack (most recent call first): config/FindBoostForALPS.cmake:61 (find_package) CMakeLists.txt:248 (find_package)
CMake Error at config/FindBoostSrc.cmake:90 (MATH): math cannot parse the expression: " / 100000": syntax error, unexpected exp_DIVIDE, expecting exp_OPENPARENT or exp_NUMBER (2)Call Stack (most recent call first): config/FindBoostForALPS.cmake:61 (find_package) CMakeLists.txt:248 (find_package)
CMake Error at config/FindBoostSrc.cmake:91 (MATH): math cannot parse the expression: " / 100 % 1000": syntax error, unexpected exp_DIVIDE, expecting exp_OPENPARENT or exp_NUMBER (2)Call Stack (most recent call first): config/FindBoostForALPS.cmake:61 (find_package) CMakeLists.txt:248 (find_package)
CMake Error at config/FindBoostSrc.cmake:92 (MATH): math cannot parse the expression: " % 100": syntax error, unexpected exp_MOD, expecting exp_OPENPARENT or exp_NUMBER (2)Call Stack (most recent call first): config/FindBoostForALPS.cmake:61 (find_package) CMakeLists.txt:248 (find_package)
-- Found Boost Source: ./boost-- Boost Version: __-- Found MPI_Fortran: /storage/openmpi/1.6.5/lib/libmpi_f90.so;/storage/openmpi/1.6.5/lib/libmpi_f77.so;/storage/openmpi/1.6.5/lib/libmpi.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so;/usr/lib/x86_64-linux-gnu/librt.so;/usr/lib/x86_64-linux-gnu/libnsl.so;/usr/lib/x86_64-linux-gnu/libutil.so;/usr/lib/x86_64-linux-gnu/libm.so;/usr/lib/x86_64-linux-gnu/libdl.so -- MPI compiler was /storage/openmpi/1.6.5/bin/mpicxxFalling back to CMake provied LAPACK/BLAS detection.-- A library with BLAS API found.-- A library with BLAS API found.-- A library with LAPACK API found.-- SQLite Library: not found-- LPSolve Library: not found-- Could NOT find SZIP (missing: SZIP_LIBRARIES SZIP_INCLUDE_DIRS) -- Found HDF5: debug;/usr/lib/libhdf5_hl.so;/usr/lib/libhdf5.so;HDF5_sz_LIBRARY_DEBUG-NOTFOUND;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/librt.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so;optimized;/usr/lib/libhdf5_hl.so;/usr/lib/libhdf5.so;HDF5_sz_LIBRARY_RELEASE-NOTFOUND;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/librt.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5: /usr/include debug;/usr/lib/libhdf5_hl.so;/usr/lib/libhdf5.so;HDF5_sz_LIBRARY_DEBUG-NOTFOUND;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/librt.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so;optimized;/usr/lib/libhdf5_hl.so;/usr/lib/libhdf5.so;HDF5_sz_LIBRARY_RELEASE-NOTFOUND;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/librt.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so HDF5_DLL-NOTFOUND;HDF5_HL_DLL-NOTFOUND-- Python interpreter /usr/bin/python-- Python interpreter ok : version 2.7.3-- PYTHON_INCLUDE_DIRS = /usr/include/python2.7-- PYTHON_NUMPY_INCLUDE_DIR = /storage/numpy/1.7.0/lib/python2.7/site-packages/numpy/core/include-- PYTHON_SITE_PKG = /usr/lib/python2.7/dist-packages-- PYTHON_LIBRARY = /usr/lib/python2.7/config/libpython2.7.so-- PYTHON_EXTRA_LIBS =-lssl -lcrypto -lssl -lcrypto -L/usr/lib -lz -lpthread -ldl -lutil-- PYTHON_LINK_FOR_SHARED = -Xlinker -export-dynamic -Wl,-O1 -Wl,-Bsymbolic-functions-- Numpy include in /storage/numpy/1.7.0/lib/python2.7/site-packages/numpy/core/include-- ALPS XML dir is /storage/alps/2.1.1/lib/xml-- Adding Boost dir: ./boost -- HDF5: /usr/include debug;/usr/lib/libhdf5_hl.so;/usr/lib/libhdf5.so;HDF5_sz_LIBRARY_DEBUG-NOTFOUND;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/librt.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so;optimized;/usr/lib/libhdf5_hl.so;/usr/lib/libhdf5.so;HDF5_sz_LIBRARY_RELEASE-NOTFOUND;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/librt.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so HDF5_DLL-NOTFOUND;HDF5_HL_DLL-NOTFOUND;HDF5_DLL-NOTFOUND;HDF5_HL_DLL-NOTFOUND-- HDF5: /usr/include debug;/usr/lib/libhdf5_hl.so;/usr/lib/libhdf5.so;HDF5_sz_LIBRARY_DEBUG-NOTFOUND;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/librt.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so;optimized;/usr/lib/libhdf5_hl.so;/usr/lib/libhdf5.so;HDF5_sz_LIBRARY_RELEASE-NOTFOUND;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/librt.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so HDF5_DLL-NOTFOUND;HDF5_HL_DLL-NOTFOUND;HDF5_DLL-NOTFOUND;HDF5_HL_DLL-NOTFOUND-- tebd will not be builtCMake Error: The following variables are used in this project, but they are set to NOTFOUND.Please set them or make sure they are set and tested correctly in the CMake files:HDF5_sz_LIBRARY_DEBUG (ADVANCED) linked by target "alps" in directory /root/Cluster/alps-2.1.1-r6176-src-with-boost/alps/src/alpsHDF5_sz_LIBRARY_RELEASE (ADVANCED) linked by target "alps" in directory /root/Cluster/alps-2.1.1-r6176-src-with-boost/alps/src/alps -- Configuring incomplete, errors occurred! But it still says it can't find szip. I am following the instructions on http://alps.comp-phys.org/mediawiki/index.php/Building_ALPS_from_source I am usingcmake -D Boost_ROOT_DIR:PATH=./boost -DCMAKE_INSTALL_PREFIX=/storage/alps/2.1.1 ./alps THANKS IN ADVANCED