Comp-phys-alps-users August 2013

comp-phys-alps-users@lists.phys.ethz.ch

10 participants
14 discussions

Inconsistent comment in generate_spline_matrix in the DMFT folder
by Kuangshing Chen 22 Jul '15

22 Jul '15

Hi, The function generate_spline_matrix in fouriertransform.C in the dmft folder shows the comments as follows: // A is the matrix whose inverse defines spline_matrix // // 6 6 // 1 4 1 // 1 4 1 // A = ... // // 1 4 1 // -2 0 0 2 However, the following codes, dense_matrix A = 4*dt/6.*boost::numeric::ublas::identity_matrix<double>(Np1); for (int i=1; i<Np1-1; i++) { A(i,i-1) = dt/6.; A(i,i+1) = dt/6.; } A(0,0) = 1.; A(0, Np1-1) = 1.; A(Np1-1, 0) = -2.*dt/6.; A(Np1-1, 1) = -1.*dt/6.; A(Np1-1, Np1-2) = 1*dt/6.; A(Np1-1, Np1-1) = 2*dt/6.; the red lines will make the matrix looks like // 6 6 // 1 4 1 // 1 4 1 // A = ... // // 1 4 1 // -2 *-1* *1* 2 Is the comment correct or the code correct? Any reference for this algorithm? Thank you, Kuang-Shing Chen

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Re: [ALPS-users] Alps 2.1.2 r6963 hybridization expansion: No parameter available
by backes＠th.physik.uni-frankfurt.de 22 Aug '13

22 Aug '13

Thanks for looking into it! I tried the newest SVN version 6991 and except for one thing everything went smoothly. My last problem is resolved now. I encountered the following error on compilation: During cmake, I got: CMake Error at applications/qmc/dwa/CMakeLists.txt:27 (install): install TARGETS given target "worldlines_c.so" which does not exist in this directory. I commented out the lines mentioned above, since I don't need it and compilation continued successfully. best wishes, Steffen > Steffen, > > it seems that the hybridization3 code was not deemed important enough to > make it into the 2.1 branch. We're working on fixing this (thanks for > telling!!!). For now, the svn code should be stable and have all the > things you need. Can you confirm? > > Cheers, > Emanuel > > On Aug 21, 2013, at 12:45 PM, backes(a)th.physik.uni-frankfurt.de wrote: > >> Hi Emanuel, >> >> thanks for the quick answer! Here is the parameter file I've been using >> for both versions of the code. alps-2.1.2-r6963 gives the error, >> alps-2.1.1-r6670 runs fine. >> But I will try the newest version from the SVN repositories and will >> report the results. >> >> SEED = 0 >> THERMALIZATION = 1000 >> SWEEPS = 10000000 >> MAX_TIME = 60 >> BETA = 40.0 >> N_MEAS = 50 >> N_HISTOGRAM_ORDERS = 50 >> N_ORBITALS = 10 >> U_MATRIX = "umatrix.dat" >> MU_VECTOR = "mu_vector.dat" >> DELTA = "delta_0.dat" >> N_TAU = 1000 >> TEXT_OUTPUT = 1 >> VERBOSE = 1 >> OUTPUT_PERIOD = 100000 >> MEASURE_freq = 0 >> MEASURE_legendre = 1 >> N_LEGENDRE = 50 >> N_MATSUBARA = 500 >> >> best wishes, >> Steffen >> >>> Hi Steffen, >>> >>> could you please send me the new and old parameter file? There have >>> been >>> quite a few changes since December and I'll need to figure out which of >>> these caused the problem... >>> >>> Emanuel >>> >>> On Aug 21, 2013, at 7:51 AM, backes(a)th.physik.uni-frankfurt.de wrote: >>> >>>> Dear all, >>>> >>>> I want to use the newest version of the ALPS Hybridization Expansion >>>> Impurity Solver from the nightly build 2.1.2-r6963. >>>> Compilation is successful, but when running the solver with a simple >>>> test >>>> case I get the following Error (I shortened the paths for >>>> readability): >>>> >>>>> hybridization parm.h5 >>>> >>>> terminate called after throwing an instance of 'std::runtime_error' >>>> what(): No parameter available >>>> In [..]/alps/src/alps/ngs/detail/paramproxy.hpp on 78 in cast >>>> [..]applications/dmft/qmc/hybridization(_ZNK4alps6detail10paramproxy4castIiEET_v+0x13d) >>>> [0x42dbad] >>>> [..]applications/dmft/qmc/hybridization(_ZN13hybridizationC1ERKN4alps6paramsEi+0x10b8) >>>> [0x43f968] >>>> [..]applications/dmft/qmc/hybridization(main+0x103) [0x41dfe3] >>>> /lib64/libc.so.6(__libc_start_main+0xfd) [0x7ffff415fcdd] >>>> [..]applications/dmft/qmc/hybridization() [0x41d409] >>>> >>>> I tested a previous version 2.1.1-r6670 with identical compilation >>>> process >>>> on the same input files and it works flawlessly. >>>> >>>> There seem to be some significant changes in this version: There is a >>>> new >>>> hybridization2 folder in applications/dmft/qmc/ and also the >>>> Documentation >>>> inside this directory vanished. Do I have to change something in my >>>> parm.h5 input file for this new version? >>>> >>>> Thanks for your help. >>>> Best wishes, >>>> Steffen >>>> >>> >>> >> > >

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Alps 2.1.2 r6963 hybridization expansion: No parameter available
by backes＠th.physik.uni-frankfurt.de 21 Aug '13

21 Aug '13

Dear all, I want to use the newest version of the ALPS Hybridization Expansion Impurity Solver from the nightly build 2.1.2-r6963. Compilation is successful, but when running the solver with a simple test case I get the following Error (I shortened the paths for readability): > hybridization parm.h5 terminate called after throwing an instance of 'std::runtime_error' what(): No parameter available In [..]/alps/src/alps/ngs/detail/paramproxy.hpp on 78 in cast [..]applications/dmft/qmc/hybridization(_ZNK4alps6detail10paramproxy4castIiEET_v+0x13d) [0x42dbad] [..]applications/dmft/qmc/hybridization(_ZN13hybridizationC1ERKN4alps6paramsEi+0x10b8) [0x43f968] [..]applications/dmft/qmc/hybridization(main+0x103) [0x41dfe3] /lib64/libc.so.6(__libc_start_main+0xfd) [0x7ffff415fcdd] [..]applications/dmft/qmc/hybridization() [0x41d409] I tested a previous version 2.1.1-r6670 with identical compilation process on the same input files and it works flawlessly. There seem to be some significant changes in this version: There is a new hybridization2 folder in applications/dmft/qmc/ and also the Documentation inside this directory vanished. Do I have to change something in my parm.h5 input file for this new version? Thanks for your help. Best wishes, Steffen

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Time propagation in TEBD stops prematurely
by Joseph Prentice 21 Aug '13

21 Aug '13

Hi all, I'm having a bit of trouble with getting a quench using the XXZ model to run in TEBD. I'm running the job on a Linux cluster, quenching Delta instantaneously from 3 to 6, and the program stops earlier than it should. I turned on the Verbose option, and it seems as though the imaginary time propagation works fine, but the real time propagation stops prematurely, with no error message. Does anyone have any idea why this has happened? It seems very odd. I will attach my Python script in case there is something wrong with it, and the output I obtained. Thanks very much, Joseph Prentice

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susceptibility units
by Tadeusz Wasiutyński 12 Aug '13

12 Aug '13

I can not figured out what are the susceptibility units in the results of calculations. In tutorial ed-06 on V15 cluster (and also results of QMC that match perfectly) for T/J=10 I would expect \chi*T as for fully decoupled 15 spins 1/2 that is S(S+1)/3 eq 0.25. There is instead 0.2375133. Where is the problem? Best wishes Tadeusz

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Re: [ALPS-users] Alps Not Installing
by dixonwille 12 Aug '13

12 Aug '13

Ok I solved it. It seems the order in which you set the variables maters. So I set the prefix first then the boost directory. Also the -D has to have a space after it for it to work. It also seems the prefix doesnt work as stated on the build from source webpage. I changed the prefix while running "ccmake ." And changed the option there. Here is what worked for me: cmake -D CMAKE_INSTALL_PREFIX:PATH=/storage/alps/2.1.1 -D Boost_ROOT_DIR:PATH=/root/Cluster/alps-2.1.1-r6176-src-with-boost/boost /root/Cluster/alps-2.1.1-r6176-src-with-boost/alps But I suspect that removing the prefix would work. Also I added the :PATH to the prefix because that is what seemed to work for the Boost. But either way (online or this way) doesnt seem to change anything. Thanks for the help. What tipped me was what German said. When i switched the boost and the prefix these errors went away. I noticed this error changed when i removed and added space behind the -D tag. Hope this helps someone else out. Sent from Samsung tablet

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Re: [ALPS-users] Alps Not Installing
by dixonwille 11 Aug '13

11 Aug '13

cmake -D Boost_ROOT_DIR:PATH=/path to alps directory/boost -DCMAKE_INSTALL_PREFIX=/storage/alps/2.1.1 /path to alps directory/alps I ran this and it still didn't work. It is giving me the same errors. Sent from Samsung tablet -------- Original message -------- From: Matthias Troyer <troyer(a)phys.ethz.ch> Date: 08/10/2013 7:45 PM (GMT-05:00) To: dixonwille <dixonwille(a)hotmail.com> Cc: Alps <comp-phys-alps-users(a)lists.phys.ethz.ch> Subject: Re: [ALPS-users] Alps Not Installing CMAKE requires the use of absolute paths and not ./... On Aug 10, 2013, at 16:41, dixonwille <dixonwille(a)hotmail.com> wrote: cmake -D Boost_ROOT_DIR:PATH=./boost -DCMAKE_INSTALL_PREFIX=/storage/alps/2.1.1 ./alps While I am in a freshly extracted directoryl of alps-2.1.1-r6176-src-with-boost.tar.gz -------- Original message -------- From: Matthias Troyer <troyer(a)phys.ethz.ch> Date: 08/10/2013 6:37 PM (GMT-05:00) To: dixonwille <dixonwille(a)hotmail.com>,comp-phys-alps-users(a)lists.phys.ethz.ch Subject: Re: [ALPS-users] Alps Not Installing What command do you run exactly? From the log it seems that you do not specify the correct directory for boost On Aug 10, 2013, at 15:43, dixonwille <dixonwille(a)hotmail.com> wrote: I extracted the download that includes boost. I cd into the un tared directory. In it has two folders, boost and alps. This is where I run the cmake command from. -------- Original message -------- From: Matthias Troyer <troyer(a)phys.ethz.ch> Date: 08/10/2013 5:38 PM (GMT-05:00) To: comp-phys-alps-users(a)lists.phys.ethz.ch Cc: comp-phys-alps-users(a)lists.phys.ethz.ch Subject: Re: [ALPS-users] Alps Not Installing It looks rom your log that you specify the wrong Directory for your Boost installation On Aug 10, 2013, at 14:44, Will Dixon <dixonwille(a)hotmail.com> wrote: I am getting errors when trying to compile Alps from source using gcc 4.8.1 and installed hdf5 through apt-get install libhdf5-serial-dev. I am using Ubuntu server 12.04 LTS. I also have openMPI 1.6.5 installed. Here is the error I am getting. -- The C compiler identification is GNU -- The CXX compiler identification is GNU -- Check for working C compiler: /storage/gcc/4.8.1/bin/gcc -- Check for working C compiler: /storage/gcc/4.8.1/bin/gcc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /storage/gcc/4.8.1/bin/c++ -- Check for working CXX compiler: /storage/gcc/4.8.1/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Build type: Release -- Python interpreter /usr/bin/python -- Python interpreter ok : version 2.7.3 -- PYTHON_INCLUDE_DIRS = /usr/include/python2.7 -- PYTHON_NUMPY_INCLUDE_DIR = /storage/numpy/1.7.0/lib/python2.7/site-packages/numpy/core/include -- PYTHON_SITE_PKG = /usr/lib/python2.7/dist-packages -- PYTHON_LIBRARY = /usr/lib/python2.7/config/libpython2.7.so -- PYTHON_EXTRA_LIBS =-lssl -lcrypto -lssl -lcrypto -L/usr/lib -lz -lpthread -ldl -lutil -- PYTHON_LINK_FOR_SHARED = -Xlinker -export-dynamic -Wl,-O1 -Wl,-Bsymbolic-functions -- ALPS version: 2.1.1 -- Looking for rpc/rpc.h -- Looking for rpc/rpc.h - found -- Looking for stdarg.h -- Looking for stdarg.h - found -- Looking for sys/stat.h -- Looking for sys/stat.h - found -- Looking for sys/systeminfo.h -- Looking for sys/systeminfo.h - not found -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for unistd.h -- Looking for unistd.h - found -- Looking for windows.h -- Looking for windows.h - not found -- Looking for C++ include valarray -- Looking for C++ include valarray - found -- Looking for Boost Source CMake Error at config/FindBoostSrc.cmake:85 (file): file Internal CMake error when trying to open file: /root/Cluster/alps-2.1.1-r6176-src-with-boost/alps/./boost/boost/version.hpp for reading. Call Stack (most recent call first): config/FindBoostForALPS.cmake:61 (find_package) CMakeLists.txt:248 (find_package) CMake Error at config/FindBoostSrc.cmake:90 (MATH): math cannot parse the expression: " / 100000": syntax error, unexpected exp_DIVIDE, expecting exp_OPENPARENT or exp_NUMBER (2) Call Stack (most recent call first): config/FindBoostForALPS.cmake:61 (find_package) CMakeLists.txt:248 (find_package) CMake Error at config/FindBoostSrc.cmake:91 (MATH): math cannot parse the expression: " / 100 % 1000": syntax error, unexpected exp_DIVIDE, expecting exp_OPENPARENT or exp_NUMBER (2) Call Stack (most recent call first): config/FindBoostForALPS.cmake:61 (find_package) CMakeLists.txt:248 (find_package) CMake Error at config/FindBoostSrc.cmake:92 (MATH): math cannot parse the expression: " % 100": syntax error, unexpected exp_MOD, expecting exp_OPENPARENT or exp_NUMBER (2) Call Stack (most recent call first): config/FindBoostForALPS.cmake:61 (find_package) CMakeLists.txt:248 (find_package) -- Found Boost Source: ./boost -- Boost Version: __ -- Found MPI_C: /storage/openmpi/1.6.5/lib/libmpi.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so;/usr/lib/x86_64-linux-gnu/librt.so;/usr/lib/x86_64-linux-gnu/libnsl.so;/usr/lib/x86_64-linux-gnu/libutil.so;/usr/lib/x86_64-linux-gnu/libm.so;/usr/lib/x86_64-linux-gnu/libdl.so -- Found MPI_CXX: /storage/openmpi/1.6.5/lib/libmpi_cxx.so;/storage/openmpi/1.6.5/lib/libmpi.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so;/usr/lib/x86_64-linux-gnu/librt.so;/usr/lib/x86_64-linux-gnu/libnsl.so;/usr/lib/x86_64-linux-gnu/libutil.so;/usr/lib/x86_64-linux-gnu/libm.so;/usr/lib/x86_64-linux-gnu/libdl.so -- MPI compiler was /storage/openmpi/1.6.5/bin/mpicxx -- The Fortran compiler identification is GNU -- Check for working Fortran compiler: /storage/gcc/4.8.1/bin/gfortran -- Check for working Fortran compiler: /storage/gcc/4.8.1/bin/gfortran -- works -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Checking whether /storage/gcc/4.8.1/bin/gfortran supports Fortran 90 -- Checking whether /storage/gcc/4.8.1/bin/gfortran supports Fortran 90 -- yes Falling back to CMake provied LAPACK/BLAS detection. -- Looking for Fortran sgemm -- Looking for Fortran sgemm - found -- Looking for include files CMAKE_HAVE_PTHREAD_H -- Looking for include files CMAKE_HAVE_PTHREAD_H - found -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- A library with BLAS API found. -- A library with BLAS API found. -- Looking for Fortran cheev -- Looking for Fortran cheev - found -- A library with LAPACK API found. -- SQLite Library: not found -- Found FFTW: /usr/lib/libfftw3.so -- LPSolve Library: not found -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so -- Could NOT find SZIP (missing: SZIP_LIBRARIES SZIP_INCLUDE_DIRS) -- Found HDF5: debug;/usr/lib/libhdf5_hl.so;/usr/lib/libhdf5.so;optimized;/usr/lib/libhdf5_hl.so;/usr/lib/libhdf5.so -- HDF5: /usr/include debug;/usr/lib/libhdf5_hl.so;/usr/lib/libhdf5.so;optimized;/usr/lib/libhdf5_hl.so;/usr/lib/libhdf5.so HDF5_DLL-NOTFOUND;HDF5_HL_DLL-NOTFOUND -- Python interpreter /usr/bin/python -- Python interpreter ok : version 2.7.3 -- PYTHON_INCLUDE_DIRS = /usr/include/python2.7 -- PYTHON_NUMPY_INCLUDE_DIR = /storage/numpy/1.7.0/lib/python2.7/site-packages/numpy/core/include -- PYTHON_SITE_PKG = /usr/lib/python2.7/dist-packages -- PYTHON_LIBRARY = /usr/lib/python2.7/config/libpython2.7.so -- PYTHON_EXTRA_LIBS =-lssl -lcrypto -lssl -lcrypto -L/usr/lib -lz -lpthread -ldl -lutil -- PYTHON_LINK_FOR_SHARED = -Xlinker -export-dynamic -Wl,-O1 -Wl,-Bsymbolic-functions -- Numpy include in /storage/numpy/1.7.0/lib/python2.7/site-packages/numpy/core/include -- ALPS XML dir is /storage/alps/2.1.1/lib/xml -- Adding Boost dir: ./boost -- HDF5: /usr/include debug;/usr/lib/libhdf5_hl.so;/usr/lib/libhdf5.so;optimized;/usr/lib/libhdf5_hl.so;/usr/lib/libhdf5.so HDF5_DLL-NOTFOUND;HDF5_HL_DLL-NOTFOUND;HDF5_DLL-NOTFOUND;HDF5_HL_DLL-NOTFOUND -- HDF5: /usr/include debug;/usr/lib/libhdf5_hl.so;/usr/lib/libhdf5.so;optimized;/usr/lib/libhdf5_hl.so;/usr/lib/libhdf5.so HDF5_DLL-NOTFOUND;HDF5_HL_DLL-NOTFOUND;HDF5_DLL-NOTFOUND;HDF5_HL_DLL-NOTFOUND -- tebd will not be built -- Configuring incomplete, errors occurred! At first glance I thought it was HDF5 so I installed from source. But I also realized I needed szip again I installed from source. Then I get this error. -- Build type: Release -- Python interpreter /usr/bin/python -- Python interpreter ok : version 2.7.3 -- PYTHON_INCLUDE_DIRS = /usr/include/python2.7 -- PYTHON_NUMPY_INCLUDE_DIR = /storage/numpy/1.7.0/lib/python2.7/site-packages/numpy/core/include -- PYTHON_SITE_PKG = /usr/lib/python2.7/dist-packages -- PYTHON_LIBRARY = /usr/lib/python2.7/config/libpython2.7.so -- PYTHON_EXTRA_LIBS =-lssl -lcrypto -lssl -lcrypto -L/usr/lib -lz -lpthread -ldl -lutil -- PYTHON_LINK_FOR_SHARED = -Xlinker -export-dynamic -Wl,-O1 -Wl,-Bsymbolic-functions -- ALPS version: 2.1.1 -- Looking for Boost Source CMake Error at config/FindBoostSrc.cmake:85 (file): file Internal CMake error when trying to open file: /root/Cluster/alps-2.1.1-r6176-src-with-boost/alps/./boost/boost/version.hpp for reading. Call Stack (most recent call first): config/FindBoostForALPS.cmake:61 (find_package) CMakeLists.txt:248 (find_package) CMake Error at config/FindBoostSrc.cmake:90 (MATH): math cannot parse the expression: " / 100000": syntax error, unexpected exp_DIVIDE, expecting exp_OPENPARENT or exp_NUMBER (2) Call Stack (most recent call first): config/FindBoostForALPS.cmake:61 (find_package) CMakeLists.txt:248 (find_package) CMake Error at config/FindBoostSrc.cmake:91 (MATH): math cannot parse the expression: " / 100 % 1000": syntax error, unexpected exp_DIVIDE, expecting exp_OPENPARENT or exp_NUMBER (2) Call Stack (most recent call first): config/FindBoostForALPS.cmake:61 (find_package) CMakeLists.txt:248 (find_package) CMake Error at config/FindBoostSrc.cmake:92 (MATH): math cannot parse the expression: " % 100": syntax error, unexpected exp_MOD, expecting exp_OPENPARENT or exp_NUMBER (2) Call Stack (most recent call first): config/FindBoostForALPS.cmake:61 (find_package) CMakeLists.txt:248 (find_package) -- Found Boost Source: ./boost -- Boost Version: __ -- Found MPI_Fortran: /storage/openmpi/1.6.5/lib/libmpi_f90.so;/storage/openmpi/1.6.5/lib/libmpi_f77.so;/storage/openmpi/1.6.5/lib/libmpi.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so;/usr/lib/x86_64-linux-gnu/librt.so

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Re: [ALPS-users] Alps Not Installing
by dixonwille 11 Aug '13

11 Aug '13

cmake -D Boost_ROOT_DIR:PATH=./boost -DCMAKE_INSTALL_PREFIX=/storage/alps/2.1.1 ./alps While I am in a freshly extracted directoryl of alps-2.1.1-r6176-src-with-boost.tar.gz -------- Original message -------- From: Matthias Troyer <troyer(a)phys.ethz.ch> Date: 08/10/2013 6:37 PM (GMT-05:00) To: dixonwille <dixonwille(a)hotmail.com>,comp-phys-alps-users(a)lists.phys.ethz.ch Subject: Re: [ALPS-users] Alps Not Installing What command do you run exactly? From the log it seems that you do not specify the correct directory for boost On Aug 10, 2013, at 15:43, dixonwille <dixonwille(a)hotmail.com> wrote: > I extracted the download that includes boost. I cd into the un tared directory. In it has two folders, boost and alps. This is where I run the cmake command from. > > > > -------- Original message -------- > From: Matthias Troyer <troyer(a)phys.ethz.ch> > Date: 08/10/2013 5:38 PM (GMT-05:00) > To: comp-phys-alps-users(a)lists.phys.ethz.ch > Cc: comp-phys-alps-users(a)lists.phys.ethz.ch > Subject: Re: [ALPS-users] Alps Not Installing > > > It looks rom your log that you specify the wrong Directory for your Boost installation > > > > > On Aug 10, 2013, at 14:44, Will Dixon <dixonwille(a)hotmail.com> wrote: > >> I am getting errors when trying to compile Alps from source using gcc 4.8.1 and installed hdf5 through apt-get install libhdf5-serial-dev. I am using Ubuntu server 12.04 LTS. I also have openMPI 1.6.5 installed. Here is the error I am getting. >> >> -- The C compiler identification is GNU >> -- The CXX compiler identification is GNU >> -- Check for working C compiler: /storage/gcc/4.8.1/bin/gcc >> -- Check for working C compiler: /storage/gcc/4.8.1/bin/gcc -- works >> -- Detecting C compiler ABI info >> -- Detecting C compiler ABI info - done >> -- Check for working CXX compiler: /storage/gcc/4.8.1/bin/c++ >> -- Check for working CXX compiler: /storage/gcc/4.8.1/bin/c++ -- works >> -- Detecting CXX compiler ABI info >> -- Detecting CXX compiler ABI info - done >> -- Build type: Release >> -- Python interpreter /usr/bin/python >> -- Python interpreter ok : version 2.7.3 >> -- PYTHON_INCLUDE_DIRS = /usr/include/python2.7 >> -- PYTHON_NUMPY_INCLUDE_DIR = /storage/numpy/1.7.0/lib/python2.7/site-packages/numpy/core/include >> -- PYTHON_SITE_PKG = /usr/lib/python2.7/dist-packages >> -- PYTHON_LIBRARY = /usr/lib/python2.7/config/libpython2.7.so >> -- PYTHON_EXTRA_LIBS =-lssl -lcrypto -lssl -lcrypto -L/usr/lib -lz -lpthread -ldl -lutil >> -- PYTHON_LINK_FOR_SHARED = -Xlinker -export-dynamic -Wl,-O1 -Wl,-Bsymbolic-functions >> -- ALPS version: 2.1.1 >> -- Looking for rpc/rpc.h >> -- Looking for rpc/rpc.h - found >> -- Looking for stdarg.h >> -- Looking for stdarg.h - found >> -- Looking for sys/stat.h >> -- Looking for sys/stat.h - found >> -- Looking for sys/systeminfo.h >> -- Looking for sys/systeminfo.h - not found >> -- Looking for sys/types.h >> -- Looking for sys/types.h - found >> -- Looking for unistd.h >> -- Looking for unistd.h - found >> -- Looking for windows.h >> -- Looking for windows.h - not found >> -- Looking for C++ include valarray >> -- Looking for C++ include valarray - found >> -- Looking for Boost Source >> CMake Error at config/FindBoostSrc.cmake:85 (file): >> file Internal CMake error when trying to open file: >> /root/Cluster/alps-2.1.1-r6176-src-with-boost/alps/./boost/boost/version.hpp >> for reading. >> Call Stack (most recent call first): >> config/FindBoostForALPS.cmake:61 (find_package) >> CMakeLists.txt:248 (find_package) >> >> >> CMake Error at config/FindBoostSrc.cmake:90 (MATH): >> math cannot parse the expression: " / 100000": syntax error, unexpected >> exp_DIVIDE, expecting exp_OPENPARENT or exp_NUMBER (2) >> Call Stack (most recent call first): >> config/FindBoostForALPS.cmake:61 (find_package) >> CMakeLists.txt:248 (find_package) >> >> >> CMake Error at config/FindBoostSrc.cmake:91 (MATH): >> math cannot parse the expression: " / 100 % 1000": syntax error, unexpected >> exp_DIVIDE, expecting exp_OPENPARENT or exp_NUMBER (2) >> Call Stack (most recent call first): >> config/FindBoostForALPS.cmake:61 (find_package) >> CMakeLists.txt:248 (find_package) >> >> >> CMake Error at config/FindBoostSrc.cmake:92 (MATH): >> math cannot parse the expression: " % 100": syntax error, unexpected >> exp_MOD, expecting exp_OPENPARENT or exp_NUMBER (2) >> Call Stack (most recent call first): >> config/FindBoostForALPS.cmake:61 (find_package) >> CMakeLists.txt:248 (find_package) >> >> >> -- Found Boost Source: ./boost >> -- Boost Version: __ >> -- Found MPI_C: /storage/openmpi/1.6.5/lib/libmpi.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so;/usr/lib/x86_64-linux-gnu/librt.so;/usr/lib/x86_64-linux-gnu/libnsl.so;/usr/lib/x86_64-linux-gnu/libutil.so;/usr/lib/x86_64-linux-gnu/libm.so;/usr/lib/x86_64-linux-gnu/libdl.so >> -- Found MPI_CXX: /storage/openmpi/1.6.5/lib/libmpi_cxx.so;/storage/openmpi/1.6.5/lib/libmpi.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so;/usr/lib/x86_64-linux-gnu/librt.so;/usr/lib/x86_64-linux-gnu/libnsl.so;/usr/lib/x86_64-linux-gnu/libutil.so;/usr/lib/x86_64-linux-gnu/libm.so;/usr/lib/x86_64-linux-gnu/libdl.so >> -- MPI compiler was /storage/openmpi/1.6.5/bin/mpicxx >> -- The Fortran compiler identification is GNU >> -- Check for working Fortran compiler: /storage/gcc/4.8.1/bin/gfortran >> -- Check for working Fortran compiler: /storage/gcc/4.8.1/bin/gfortran -- works >> -- Detecting Fortran compiler ABI info >> -- Detecting Fortran compiler ABI info - done >> -- Checking whether /storage/gcc/4.8.1/bin/gfortran supports Fortran 90 >> -- Checking whether /storage/gcc/4.8.1/bin/gfortran supports Fortran 90 -- yes >> Falling back to CMake provied LAPACK/BLAS detection. >> -- Looking for Fortran sgemm >> -- Looking for Fortran sgemm - found >> -- Looking for include files CMAKE_HAVE_PTHREAD_H >> -- Looking for include files CMAKE_HAVE_PTHREAD_H - found >> -- Looking for pthread_create in pthreads >> -- Looking for pthread_create in pthreads - not found >> -- Looking for pthread_create in pthread >> -- Looking for pthread_create in pthread - found >> -- Found Threads: TRUE >> -- A library with BLAS API found. >> -- A library with BLAS API found. >> -- Looking for Fortran cheev >> -- Looking for Fortran cheev - found >> -- A library with LAPACK API found. >> -- SQLite Library: not found >> -- Found FFTW: /usr/lib/libfftw3.so >> -- LPSolve Library: not found >> -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so >> -- Could NOT find SZIP (missing: SZIP_LIBRARIES SZIP_INCLUDE_DIRS) >> -- Found HDF5: debug;/usr/lib/libhdf5_hl.so;/usr/lib/libhdf5.so;optimized;/usr/lib/libhdf5_hl.so;/usr/lib/libhdf5.so >> -- HDF5: /usr/include debug;/usr/lib/libhdf5_hl.so;/usr/lib/libhdf5.so;optimized;/usr/lib/libhdf5_hl.so;/usr/lib/libhdf5.so HDF5_DLL-NOTFOUND;HDF5_HL_DLL-NOTFOUND >> -- Python interpreter /usr/bin/python >> -- Python interpreter ok : version 2.7.3 >> -- PYTHON_INCLUDE_DIRS = /usr/include/python2.7 >> -- PYTHON_NUMPY_INCLUDE_DIR = /storage/numpy/1.7.0/lib/python2.7/site-packages/numpy/core/include >> -- PYTHON_SITE_PKG = /usr/lib/python2.7/dist-packages >> -- PYTHON_LIBRARY = /usr/lib/python2.7/config/libpython2.7.so >> -- PYTHON_EXTRA_LIBS =-lssl -lcrypto -lssl -lcrypto -L/usr/lib -lz -lpthread -ldl -lutil >> -- PYTHON_LINK_FOR_SHARED = -Xlinker -export-dynamic -Wl,-O1 -Wl,-Bsymbolic-functions >> -- Numpy include in /storage/numpy/1.7.0/lib/python2.7/site-packages/numpy/core/include >> -- ALPS XML dir is /storage/alps/2.1.1/lib/xml >> -- Adding Boost dir: ./boost >> -- HDF5: /usr/include debug;/usr/lib/libhdf5_hl.so;/usr/lib/libhdf5.so;optimized;/usr/lib/libhdf5_hl.so;/usr/lib/libhdf5.so HDF5_DLL-NOTFOUND;HDF5_HL_DLL-NOTFOUND;HDF5_DLL-NOTFOUND;HDF5_HL_DLL-NOTFOUND >> -- HDF5: /usr/include debug;/usr/lib/libhdf5_hl.so;/usr/lib/libhdf5.so;optimized;/usr/lib/libhdf5_hl.so;/usr/lib/libhdf5.so HDF5_DLL-NOTFOUND;HDF5_HL_DLL-NOTFOUND;HDF5_DLL-NOTFOUND;HDF5_HL_DLL-NOTFOUND >> -- tebd will not be built >> -- Configuring incomplete, errors occurred! >> >> At first glance I thought it was HDF5 so I installed from source. But I also realized I needed szip again I installed from source. Then I get this error. >> >> -- Build type: Release >> -- Python interpreter /usr/bin/python >> -- Python interpreter ok : version 2.7.3 >> -- PYTHON_INCLUDE_DIRS = /usr/include/python2.7 >> -- PYTHON_NUMPY_INCLUDE_DIR = /storage/numpy/1.7.0/lib/python2.7/site-packages/numpy/core/include >> -- PYTHON_SITE_PKG = /usr/lib/python2.7/dist-packages >> -- PYTHON_LIBRARY = /usr/lib/python2.7/config/libpython2.7.so >> -- PYTHON_EXTRA_LIBS =-lssl -lcrypto -lssl -lcrypto -L/usr/lib -lz -lpthread -ldl -lutil >> -- PYTHON_LINK_FOR_SHARED = -Xlinker -export-dynamic -Wl,-O1 -Wl,-Bsymbolic-functions >> -- ALPS version: 2.1.1 >> -- Looking for Boost Source >> CMake Error at config/FindBoostSrc.cmake:85 (file): >> file Internal CMake error when trying to open file: >> /root/Cluster/alps-2.1.1-r6176-src-with-boost/alps/./boost/boost/version.hpp >> for reading. >> Call Stack (most recent call first): >> config/FindBoostForALPS.cmake:61 (find_package) >> CMakeLists.txt:248 (find_package) >> >> >> CMake Error at config/FindBoostSrc.cmake:90 (MATH): >> math cannot parse the expression: " / 100000": syntax error, unexpected >> exp_DIVIDE, expecting exp_OPENPARENT or exp_NUMBER (2) >> Call Stack (most recent call first): >> config/FindBoostForALPS.cmake:61 (find_package) >> CMakeLists.txt:248 (find_package) >> >> >> CMake Error at config/FindBoostSrc.cmake:91 (MATH): >> math cannot parse the expression: " / 100 % 1000": syntax error, unexpected >> exp_DIVIDE, expecting exp_OPENPARENT or exp_NUMBER (2) >> Call Stack (most recent call first): >> config/FindBoostForALPS.cmake:61 (find_package) >> CMakeLists.txt:248 (find_package) >> >> >> CMake Error at config/FindBoostSrc.cmake:92 (MATH): >> math cannot parse the expression: " % 100": syntax error, unexpected >> exp_MOD, expecting exp_OPENPARENT or exp_NUMBER (2) >> Call Stack (most recent call first): >> config/FindBoostForALPS.cmake:61 (find_package) >> CMakeLists.txt:248 (find_package) >> >> >> -- Found Boost Source: ./boost >> -- Boost Version: __ >> -- Found MPI_Fortran: /storage/openmpi/1.6.5/lib/libmpi_f90.so;/storage/openmpi/1.6.5/lib/libmpi_f77.so;/storage/openmpi/1.6.5/lib/libmpi.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so;/usr/lib/x86_64-linux-gnu/librt.so

2 1

Re: [ALPS-users] Alps Not Installing
by dixonwille 11 Aug '13

11 Aug '13

I extracted the download that includes boost. I cd into the un tared directory. In it has two folders, boost and alps. This is where I run the cmake command from. -------- Original message -------- From: Matthias Troyer <troyer(a)phys.ethz.ch> Date: 08/10/2013 5:38 PM (GMT-05:00) To: comp-phys-alps-users(a)lists.phys.ethz.ch Cc: comp-phys-alps-users(a)lists.phys.ethz.ch Subject: Re: [ALPS-users] Alps Not Installing It looks rom your log that you specify the wrong Directory for your Boost installation On Aug 10, 2013, at 14:44, Will Dixon <dixonwille(a)hotmail.com> wrote: I am getting errors when trying to compile Alps from source using gcc 4.8.1 and installed hdf5 through apt-get install libhdf5-serial-dev. I am using Ubuntu server 12.04 LTS. I also have openMPI 1.6.5 installed. Here is the error I am getting. -- The C compiler identification is GNU -- The CXX compiler identification is GNU -- Check for working C compiler: /storage/gcc/4.8.1/bin/gcc -- Check for working C compiler: /storage/gcc/4.8.1/bin/gcc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /storage/gcc/4.8.1/bin/c++ -- Check for working CXX compiler: /storage/gcc/4.8.1/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Build type: Release -- Python interpreter /usr/bin/python -- Python interpreter ok : version 2.7.3 -- PYTHON_INCLUDE_DIRS = /usr/include/python2.7 -- PYTHON_NUMPY_INCLUDE_DIR = /storage/numpy/1.7.0/lib/python2.7/site-packages/numpy/core/include -- PYTHON_SITE_PKG = /usr/lib/python2.7/dist-packages -- PYTHON_LIBRARY = /usr/lib/python2.7/config/libpython2.7.so -- PYTHON_EXTRA_LIBS =-lssl -lcrypto -lssl -lcrypto -L/usr/lib -lz -lpthread -ldl -lutil -- PYTHON_LINK_FOR_SHARED = -Xlinker -export-dynamic -Wl,-O1 -Wl,-Bsymbolic-functions -- ALPS version: 2.1.1 -- Looking for rpc/rpc.h -- Looking for rpc/rpc.h - found -- Looking for stdarg.h -- Looking for stdarg.h - found -- Looking for sys/stat.h -- Looking for sys/stat.h - found -- Looking for sys/systeminfo.h -- Looking for sys/systeminfo.h - not found -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for unistd.h -- Looking for unistd.h - found -- Looking for windows.h -- Looking for windows.h - not found -- Looking for C++ include valarray -- Looking for C++ include valarray - found -- Looking for Boost Source CMake Error at config/FindBoostSrc.cmake:85 (file): file Internal CMake error when trying to open file: /root/Cluster/alps-2.1.1-r6176-src-with-boost/alps/./boost/boost/version.hpp for reading. Call Stack (most recent call first): config/FindBoostForALPS.cmake:61 (find_package) CMakeLists.txt:248 (find_package) CMake Error at config/FindBoostSrc.cmake:90 (MATH): math cannot parse the expression: " / 100000": syntax error, unexpected exp_DIVIDE, expecting exp_OPENPARENT or exp_NUMBER (2) Call Stack (most recent call first): config/FindBoostForALPS.cmake:61 (find_package) CMakeLists.txt:248 (find_package) CMake Error at config/FindBoostSrc.cmake:91 (MATH): math cannot parse the expression: " / 100 % 1000": syntax error, unexpected exp_DIVIDE, expecting exp_OPENPARENT or exp_NUMBER (2) Call Stack (most recent call first): config/FindBoostForALPS.cmake:61 (find_package) CMakeLists.txt:248 (find_package) CMake Error at config/FindBoostSrc.cmake:92 (MATH): math cannot parse the expression: " % 100": syntax error, unexpected exp_MOD, expecting exp_OPENPARENT or exp_NUMBER (2) Call Stack (most recent call first): config/FindBoostForALPS.cmake:61 (find_package) CMakeLists.txt:248 (find_package) -- Found Boost Source: ./boost -- Boost Version: __ -- Found MPI_C: /storage/openmpi/1.6.5/lib/libmpi.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so;/usr/lib/x86_64-linux-gnu/librt.so;/usr/lib/x86_64-linux-gnu/libnsl.so;/usr/lib/x86_64-linux-gnu/libutil.so;/usr/lib/x86_64-linux-gnu/libm.so;/usr/lib/x86_64-linux-gnu/libdl.so -- Found MPI_CXX: /storage/openmpi/1.6.5/lib/libmpi_cxx.so;/storage/openmpi/1.6.5/lib/libmpi.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so;/usr/lib/x86_64-linux-gnu/librt.so;/usr/lib/x86_64-linux-gnu/libnsl.so;/usr/lib/x86_64-linux-gnu/libutil.so;/usr/lib/x86_64-linux-gnu/libm.so;/usr/lib/x86_64-linux-gnu/libdl.so -- MPI compiler was /storage/openmpi/1.6.5/bin/mpicxx -- The Fortran compiler identification is GNU -- Check for working Fortran compiler: /storage/gcc/4.8.1/bin/gfortran -- Check for working Fortran compiler: /storage/gcc/4.8.1/bin/gfortran -- works -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Checking whether /storage/gcc/4.8.1/bin/gfortran supports Fortran 90 -- Checking whether /storage/gcc/4.8.1/bin/gfortran supports Fortran 90 -- yes Falling back to CMake provied LAPACK/BLAS detection. -- Looking for Fortran sgemm -- Looking for Fortran sgemm - found -- Looking for include files CMAKE_HAVE_PTHREAD_H -- Looking for include files CMAKE_HAVE_PTHREAD_H - found -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- A library with BLAS API found. -- A library with BLAS API found. -- Looking for Fortran cheev -- Looking for Fortran cheev - found -- A library with LAPACK API found. -- SQLite Library: not found -- Found FFTW: /usr/lib/libfftw3.so -- LPSolve Library: not found -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so -- Could NOT find SZIP (missing: SZIP_LIBRARIES SZIP_INCLUDE_DIRS) -- Found HDF5: debug;/usr/lib/libhdf5_hl.so;/usr/lib/libhdf5.so;optimized;/usr/lib/libhdf5_hl.so;/usr/lib/libhdf5.so -- HDF5: /usr/include debug;/usr/lib/libhdf5_hl.so;/usr/lib/libhdf5.so;optimized;/usr/lib/libhdf5_hl.so;/usr/lib/libhdf5.so HDF5_DLL-NOTFOUND;HDF5_HL_DLL-NOTFOUND -- Python interpreter /usr/bin/python -- Python interpreter ok : version 2.7.3 -- PYTHON_INCLUDE_DIRS = /usr/include/python2.7 -- PYTHON_NUMPY_INCLUDE_DIR = /storage/numpy/1.7.0/lib/python2.7/site-packages/numpy/core/include -- PYTHON_SITE_PKG = /usr/lib/python2.7/dist-packages -- PYTHON_LIBRARY = /usr/lib/python2.7/config/libpython2.7.so -- PYTHON_EXTRA_LIBS =-lssl -lcrypto -lssl -lcrypto -L/usr/lib -lz -lpthread -ldl -lutil -- PYTHON_LINK_FOR_SHARED = -Xlinker -export-dynamic -Wl,-O1 -Wl,-Bsymbolic-functions -- Numpy include in /storage/numpy/1.7.0/lib/python2.7/site-packages/numpy/core/include -- ALPS XML dir is /storage/alps/2.1.1/lib/xml -- Adding Boost dir: ./boost -- HDF5: /usr/include debug;/usr/lib/libhdf5_hl.so;/usr/lib/libhdf5.so;optimized;/usr/lib/libhdf5_hl.so;/usr/lib/libhdf5.so HDF5_DLL-NOTFOUND;HDF5_HL_DLL-NOTFOUND;HDF5_DLL-NOTFOUND;HDF5_HL_DLL-NOTFOUND -- HDF5: /usr/include debug;/usr/lib/libhdf5_hl.so;/usr/lib/libhdf5.so;optimized;/usr/lib/libhdf5_hl.so;/usr/lib/libhdf5.so HDF5_DLL-NOTFOUND;HDF5_HL_DLL-NOTFOUND;HDF5_DLL-NOTFOUND;HDF5_HL_DLL-NOTFOUND -- tebd will not be built -- Configuring incomplete, errors occurred! At first glance I thought it was HDF5 so I installed from source. But I also realized I needed szip again I installed from source. Then I get this error. -- Build type: Release -- Python interpreter /usr/bin/python -- Python interpreter ok : version 2.7.3 -- PYTHON_INCLUDE_DIRS = /usr/include/python2.7 -- PYTHON_NUMPY_INCLUDE_DIR = /storage/numpy/1.7.0/lib/python2.7/site-packages/numpy/core/include -- PYTHON_SITE_PKG = /usr/lib/python2.7/dist-packages -- PYTHON_LIBRARY = /usr/lib/python2.7/config/libpython2.7.so -- PYTHON_EXTRA_LIBS =-lssl -lcrypto -lssl -lcrypto -L/usr/lib -lz -lpthread -ldl -lutil -- PYTHON_LINK_FOR_SHARED = -Xlinker -export-dynamic -Wl,-O1 -Wl,-Bsymbolic-functions -- ALPS version: 2.1.1 -- Looking for Boost Source CMake Error at config/FindBoostSrc.cmake:85 (file): file Internal CMake error when trying to open file: /root/Cluster/alps-2.1.1-r6176-src-with-boost/alps/./boost/boost/version.hpp for reading. Call Stack (most recent call first): config/FindBoostForALPS.cmake:61 (find_package) CMakeLists.txt:248 (find_package) CMake Error at config/FindBoostSrc.cmake:90 (MATH): math cannot parse the expression: " / 100000": syntax error, unexpected exp_DIVIDE, expecting exp_OPENPARENT or exp_NUMBER (2) Call Stack (most recent call first): config/FindBoostForALPS.cmake:61 (find_package) CMakeLists.txt:248 (find_package) CMake Error at config/FindBoostSrc.cmake:91 (MATH): math cannot parse the expression: " / 100 % 1000": syntax error, unexpected exp_DIVIDE, expecting exp_OPENPARENT or exp_NUMBER (2) Call Stack (most recent call first): config/FindBoostForALPS.cmake:61 (find_package) CMakeLists.txt:248 (find_package) CMake Error at config/FindBoostSrc.cmake:92 (MATH): math cannot parse the expression: " % 100": syntax error, unexpected exp_MOD, expecting exp_OPENPARENT or exp_NUMBER (2) Call Stack (most recent call first): config/FindBoostForALPS.cmake:61 (find_package) CMakeLists.txt:248 (find_package) -- Found Boost Source: ./boost -- Boost Version: __ -- Found MPI_Fortran: /storage/openmpi/1.6.5/lib/libmpi_f90.so;/storage/openmpi/1.6.5/lib/libmpi_f77.so;/storage/openmpi/1.6.5/lib/libmpi.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so;/usr/lib/x86_64-linux-gnu/librt.so;/usr/lib/x86_64-linux-gnu/libnsl.so;/usr/lib/x86_64-linux-gnu/libutil.so;/usr/lib/x86_64-linux-gnu/libm.so;/usr/lib/x86_64-linux-gnu/libdl.so -- MPI compiler was /storage/openmpi/1.6.5/bin/mpicxx Falling back to CMake provied LAPACK/BLAS detection. -- A library with BLAS API found. -- A library with BLAS API found. -- A library with LAPACK API found. -- SQLite Library: not found -- LPSolve Library: not found -- Could NOT find SZIP (missing: SZIP_LIBRARIES SZIP_INCLUDE_DIRS) -- Found HDF5: debug;/usr/lib/libhdf5_hl.so;/usr/lib/libhdf5.so;HDF5_sz_LIBRARY_DEBUG-NOTFOUND;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/librt.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so;optimized;/usr/lib/libhdf5_hl.so;/usr/lib/libhdf5.so;HDF5_sz_LIBRARY_RELEASE-NOTFOUND;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/librt.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5: /usr/include debug;/usr/lib/libhdf5_hl.so;/usr/lib/libhdf5.so;HDF5_sz_LIBRARY_DEBUG-NOTFOUND;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/librt.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so;optimized;/usr/lib/libhdf5_hl.so;/usr/lib/libhdf5.so;HDF5_sz_LIBRARY_RELEASE-NOTFOUND;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/librt.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so HDF5_DLL-NOTFOUND;HDF5_HL_DLL-NOTFOUND -- Python interpreter /usr/bin/python -- Python interpreter ok : version 2.7.3 -- PYTHON_INCLUDE_DIRS = /usr/include/python2.7 -- PYTHON_NUMPY_INCLUDE_DIR = /storage/numpy/1.7.0/lib/python2.7/site-packages/numpy/core/include -- PYTHON_SITE_PKG = /usr/lib/python2.7/dist-packages -- PYTHON_LIBRARY = /usr/lib/python2.7/config/libpython2.7.so -- PYTHON_EXTRA_LIBS =-lssl -lcrypto -lssl -lcrypto -L/usr/lib -lz -lpthread -ldl -lutil -- PYTHON_LINK_FOR_SHARED = -Xlinker -export-dynamic -Wl,-O1 -Wl,-Bsymbolic-functions -- Numpy include in /storage/numpy/1.7.0/lib/python2.7/site-packages/numpy/core/include -- ALPS XML dir is /storage/alps/2.1.1/lib/xml -- Adding Boost dir: ./boost -- HDF5: /usr/include debug;/usr/lib/libhdf5_hl.so;/usr/lib/libhdf5.so;HDF5_sz_LIBRARY_DEBUG-NOTFOUND;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/librt.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so;optimized;/usr/lib/libhdf5_hl.so;/usr/lib/libhdf5.so;HDF5_sz_LIBRARY_RELEASE-NOTFOUND;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/librt.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so HDF5_DLL-NOTFOUND;HDF5_HL_DLL-NOTFOUND;HDF5_DLL-NOTFOUND;HDF5_HL_DLL-NOTFOUND -- HDF5: /usr/include debug;/usr/lib/libhdf5_hl.so;/usr/lib/libhdf5.so;HDF5_sz_LIBRARY_DEBUG-NOTFOUND;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/librt.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so;optimized;/usr/lib/libhdf5_hl.so;/usr/lib/libhdf5.so;HDF5_sz_LIBRARY_RELEASE-NOTFOUND;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/librt.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so HDF5_DLL-NOTFOUND;HDF5_HL_DLL-NOTFOUND;HDF5_DLL-NOTFOUND;HDF5_HL_DLL-NOTFOUND -- tebd will not be built CMake Error: The following variables are used in this project, but they are set to NOTFOUND. Please set them or make sure they are set and tested correctly in the CMake files: HDF5_sz_LIBRARY_DEBUG (ADVANCED) linked by target "alps" in directory /root/Cluster/alps-2.1.1-r6176-src-with-boost/alps/src/alps HDF5_sz_LIBRARY_RELEASE (ADVANCED) linked by target "alps" in directory /root/Cluster/alps-2.1.1-r6176-src-with-boost/alps/src/alps -- Configuring incomplete, errors occurred! But it still says it can't find szip. I am following the instructions on http://alps.comp-phys.org/mediawiki/index.php/Building_ALPS_from_source I am using cmake -D Boost_ROOT_DIR:PATH=./boost -DCMAKE_INSTALL_PREFIX=/storage/alps/2.1.1 ./alps THANKS IN ADVANCED

2 1

Alps Not Installing
by Will Dixon 10 Aug '13

10 Aug '13

I am getting errors when trying to compile Alps from source using gcc 4.8.1 and installed hdf5 through apt-get install libhdf5-serial-dev. I am using Ubuntu server 12.04 LTS. I also have openMPI 1.6.5 installed. Here is the error I am getting. -- The C compiler identification is GNU-- The CXX compiler identification is GNU-- Check for working C compiler: /storage/gcc/4.8.1/bin/gcc-- Check for working C compiler: /storage/gcc/4.8.1/bin/gcc -- works-- Detecting C compiler ABI info-- Detecting C compiler ABI info - done-- Check for working CXX compiler: /storage/gcc/4.8.1/bin/c++-- Check for working CXX compiler: /storage/gcc/4.8.1/bin/c++ -- works-- Detecting CXX compiler ABI info-- Detecting CXX compiler ABI info - done-- Build type: Release-- Python interpreter /usr/bin/python-- Python interpreter ok : version 2.7.3-- PYTHON_INCLUDE_DIRS = /usr/include/python2.7-- PYTHON_NUMPY_INCLUDE_DIR = /storage/numpy/1.7.0/lib/python2.7/site-packages/numpy/core/include-- PYTHON_SITE_PKG = /usr/lib/python2.7/dist-packages-- PYTHON_LIBRARY = /usr/lib/python2.7/config/libpython2.7.so-- PYTHON_EXTRA_LIBS =-lssl -lcrypto -lssl -lcrypto -L/usr/lib -lz -lpthread -ldl -lutil-- PYTHON_LINK_FOR_SHARED = -Xlinker -export-dynamic -Wl,-O1 -Wl,-Bsymbolic-functions-- ALPS version: 2.1.1-- Looking for rpc/rpc.h-- Looking for rpc/rpc.h - found-- Looking for stdarg.h-- Looking for stdarg.h - found-- Looking for sys/stat.h-- Looking for sys/stat.h - found-- Looking for sys/systeminfo.h-- Looking for sys/systeminfo.h - not found-- Looking for sys/types.h-- Looking for sys/types.h - found-- Looking for unistd.h-- Looking for unistd.h - found-- Looking for windows.h-- Looking for windows.h - not found-- Looking for C++ include valarray-- Looking for C++ include valarray - found-- Looking for Boost SourceCMake Error at config/FindBoostSrc.cmake:85 (file): file Internal CMake error when trying to open file: /root/Cluster/alps-2.1.1-r6176-src-with-boost/alps/./boost/boost/version.hpp for reading.Call Stack (most recent call first): config/FindBoostForALPS.cmake:61 (find_package) CMakeLists.txt:248 (find_package) CMake Error at config/FindBoostSrc.cmake:90 (MATH): math cannot parse the expression: " / 100000": syntax error, unexpected exp_DIVIDE, expecting exp_OPENPARENT or exp_NUMBER (2)Call Stack (most recent call first): config/FindBoostForALPS.cmake:61 (find_package) CMakeLists.txt:248 (find_package) CMake Error at config/FindBoostSrc.cmake:91 (MATH): math cannot parse the expression: " / 100 % 1000": syntax error, unexpected exp_DIVIDE, expecting exp_OPENPARENT or exp_NUMBER (2)Call Stack (most recent call first): config/FindBoostForALPS.cmake:61 (find_package) CMakeLists.txt:248 (find_package) CMake Error at config/FindBoostSrc.cmake:92 (MATH): math cannot parse the expression: " % 100": syntax error, unexpected exp_MOD, expecting exp_OPENPARENT or exp_NUMBER (2)Call Stack (most recent call first): config/FindBoostForALPS.cmake:61 (find_package) CMakeLists.txt:248 (find_package) -- Found Boost Source: ./boost-- Boost Version: __-- Found MPI_C: /storage/openmpi/1.6.5/lib/libmpi.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so;/usr/lib/x86_64-linux-gnu/librt.so;/usr/lib/x86_64-linux-gnu/libnsl.so;/usr/lib/x86_64-linux-gnu/libutil.so;/usr/lib/x86_64-linux-gnu/libm.so;/usr/lib/x86_64-linux-gnu/libdl.so -- Found MPI_CXX: /storage/openmpi/1.6.5/lib/libmpi_cxx.so;/storage/openmpi/1.6.5/lib/libmpi.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so;/usr/lib/x86_64-linux-gnu/librt.so;/usr/lib/x86_64-linux-gnu/libnsl.so;/usr/lib/x86_64-linux-gnu/libutil.so;/usr/lib/x86_64-linux-gnu/libm.so;/usr/lib/x86_64-linux-gnu/libdl.so -- MPI compiler was /storage/openmpi/1.6.5/bin/mpicxx-- The Fortran compiler identification is GNU-- Check for working Fortran compiler: /storage/gcc/4.8.1/bin/gfortran-- Check for working Fortran compiler: /storage/gcc/4.8.1/bin/gfortran -- works-- Detecting Fortran compiler ABI info-- Detecting Fortran compiler ABI info - done-- Checking whether /storage/gcc/4.8.1/bin/gfortran supports Fortran 90-- Checking whether /storage/gcc/4.8.1/bin/gfortran supports Fortran 90 -- yesFalling back to CMake provied LAPACK/BLAS detection.-- Looking for Fortran sgemm-- Looking for Fortran sgemm - found-- Looking for include files CMAKE_HAVE_PTHREAD_H-- Looking for include files CMAKE_HAVE_PTHREAD_H - found-- Looking for pthread_create in pthreads-- Looking for pthread_create in pthreads - not found-- Looking for pthread_create in pthread-- Looking for pthread_create in pthread - found-- Found Threads: TRUE -- A library with BLAS API found.-- A library with BLAS API found.-- Looking for Fortran cheev-- Looking for Fortran cheev - found-- A library with LAPACK API found.-- SQLite Library: not found-- Found FFTW: /usr/lib/libfftw3.so -- LPSolve Library: not found-- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so -- Could NOT find SZIP (missing: SZIP_LIBRARIES SZIP_INCLUDE_DIRS) -- Found HDF5: debug;/usr/lib/libhdf5_hl.so;/usr/lib/libhdf5.so;optimized;/usr/lib/libhdf5_hl.so;/usr/lib/libhdf5.so -- HDF5: /usr/include debug;/usr/lib/libhdf5_hl.so;/usr/lib/libhdf5.so;optimized;/usr/lib/libhdf5_hl.so;/usr/lib/libhdf5.so HDF5_DLL-NOTFOUND;HDF5_HL_DLL-NOTFOUND-- Python interpreter /usr/bin/python-- Python interpreter ok : version 2.7.3-- PYTHON_INCLUDE_DIRS = /usr/include/python2.7-- PYTHON_NUMPY_INCLUDE_DIR = /storage/numpy/1.7.0/lib/python2.7/site-packages/numpy/core/include-- PYTHON_SITE_PKG = /usr/lib/python2.7/dist-packages-- PYTHON_LIBRARY = /usr/lib/python2.7/config/libpython2.7.so-- PYTHON_EXTRA_LIBS =-lssl -lcrypto -lssl -lcrypto -L/usr/lib -lz -lpthread -ldl -lutil-- PYTHON_LINK_FOR_SHARED = -Xlinker -export-dynamic -Wl,-O1 -Wl,-Bsymbolic-functions-- Numpy include in /storage/numpy/1.7.0/lib/python2.7/site-packages/numpy/core/include-- ALPS XML dir is /storage/alps/2.1.1/lib/xml-- Adding Boost dir: ./boost -- HDF5: /usr/include debug;/usr/lib/libhdf5_hl.so;/usr/lib/libhdf5.so;optimized;/usr/lib/libhdf5_hl.so;/usr/lib/libhdf5.so HDF5_DLL-NOTFOUND;HDF5_HL_DLL-NOTFOUND;HDF5_DLL-NOTFOUND;HDF5_HL_DLL-NOTFOUND-- HDF5: /usr/include debug;/usr/lib/libhdf5_hl.so;/usr/lib/libhdf5.so;optimized;/usr/lib/libhdf5_hl.so;/usr/lib/libhdf5.so HDF5_DLL-NOTFOUND;HDF5_HL_DLL-NOTFOUND;HDF5_DLL-NOTFOUND;HDF5_HL_DLL-NOTFOUND-- tebd will not be built-- Configuring incomplete, errors occurred! At first glance I thought it was HDF5 so I installed from source. But I also realized I needed szip again I installed from source. Then I get this error. -- Build type: Release-- Python interpreter /usr/bin/python-- Python interpreter ok : version 2.7.3-- PYTHON_INCLUDE_DIRS = /usr/include/python2.7-- PYTHON_NUMPY_INCLUDE_DIR = /storage/numpy/1.7.0/lib/python2.7/site-packages/numpy/core/include-- PYTHON_SITE_PKG = /usr/lib/python2.7/dist-packages-- PYTHON_LIBRARY = /usr/lib/python2.7/config/libpython2.7.so-- PYTHON_EXTRA_LIBS =-lssl -lcrypto -lssl -lcrypto -L/usr/lib -lz -lpthread -ldl -lutil-- PYTHON_LINK_FOR_SHARED = -Xlinker -export-dynamic -Wl,-O1 -Wl,-Bsymbolic-functions-- ALPS version: 2.1.1-- Looking for Boost SourceCMake Error at config/FindBoostSrc.cmake:85 (file): file Internal CMake error when trying to open file: /root/Cluster/alps-2.1.1-r6176-src-with-boost/alps/./boost/boost/version.hpp for reading.Call Stack (most recent call first): config/FindBoostForALPS.cmake:61 (find_package) CMakeLists.txt:248 (find_package) CMake Error at config/FindBoostSrc.cmake:90 (MATH): math cannot parse the expression: " / 100000": syntax error, unexpected exp_DIVIDE, expecting exp_OPENPARENT or exp_NUMBER (2)Call Stack (most recent call first): config/FindBoostForALPS.cmake:61 (find_package) CMakeLists.txt:248 (find_package) CMake Error at config/FindBoostSrc.cmake:91 (MATH): math cannot parse the expression: " / 100 % 1000": syntax error, unexpected exp_DIVIDE, expecting exp_OPENPARENT or exp_NUMBER (2)Call Stack (most recent call first): config/FindBoostForALPS.cmake:61 (find_package) CMakeLists.txt:248 (find_package) CMake Error at config/FindBoostSrc.cmake:92 (MATH): math cannot parse the expression: " % 100": syntax error, unexpected exp_MOD, expecting exp_OPENPARENT or exp_NUMBER (2)Call Stack (most recent call first): config/FindBoostForALPS.cmake:61 (find_package) CMakeLists.txt:248 (find_package) -- Found Boost Source: ./boost-- Boost Version: __-- Found MPI_Fortran: /storage/openmpi/1.6.5/lib/libmpi_f90.so;/storage/openmpi/1.6.5/lib/libmpi_f77.so;/storage/openmpi/1.6.5/lib/libmpi.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so;/usr/lib/x86_64-linux-gnu/librt.so;/usr/lib/x86_64-linux-gnu/libnsl.so;/usr/lib/x86_64-linux-gnu/libutil.so;/usr/lib/x86_64-linux-gnu/libm.so;/usr/lib/x86_64-linux-gnu/libdl.so -- MPI compiler was /storage/openmpi/1.6.5/bin/mpicxxFalling back to CMake provied LAPACK/BLAS detection.-- A library with BLAS API found.-- A library with BLAS API found.-- A library with LAPACK API found.-- SQLite Library: not found-- LPSolve Library: not found-- Could NOT find SZIP (missing: SZIP_LIBRARIES SZIP_INCLUDE_DIRS) -- Found HDF5: debug;/usr/lib/libhdf5_hl.so;/usr/lib/libhdf5.so;HDF5_sz_LIBRARY_DEBUG-NOTFOUND;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/librt.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so;optimized;/usr/lib/libhdf5_hl.so;/usr/lib/libhdf5.so;HDF5_sz_LIBRARY_RELEASE-NOTFOUND;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/librt.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5: /usr/include debug;/usr/lib/libhdf5_hl.so;/usr/lib/libhdf5.so;HDF5_sz_LIBRARY_DEBUG-NOTFOUND;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/librt.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so;optimized;/usr/lib/libhdf5_hl.so;/usr/lib/libhdf5.so;HDF5_sz_LIBRARY_RELEASE-NOTFOUND;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/librt.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so HDF5_DLL-NOTFOUND;HDF5_HL_DLL-NOTFOUND-- Python interpreter /usr/bin/python-- Python interpreter ok : version 2.7.3-- PYTHON_INCLUDE_DIRS = /usr/include/python2.7-- PYTHON_NUMPY_INCLUDE_DIR = /storage/numpy/1.7.0/lib/python2.7/site-packages/numpy/core/include-- PYTHON_SITE_PKG = /usr/lib/python2.7/dist-packages-- PYTHON_LIBRARY = /usr/lib/python2.7/config/libpython2.7.so-- PYTHON_EXTRA_LIBS =-lssl -lcrypto -lssl -lcrypto -L/usr/lib -lz -lpthread -ldl -lutil-- PYTHON_LINK_FOR_SHARED = -Xlinker -export-dynamic -Wl,-O1 -Wl,-Bsymbolic-functions-- Numpy include in /storage/numpy/1.7.0/lib/python2.7/site-packages/numpy/core/include-- ALPS XML dir is /storage/alps/2.1.1/lib/xml-- Adding Boost dir: ./boost -- HDF5: /usr/include debug;/usr/lib/libhdf5_hl.so;/usr/lib/libhdf5.so;HDF5_sz_LIBRARY_DEBUG-NOTFOUND;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/librt.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so;optimized;/usr/lib/libhdf5_hl.so;/usr/lib/libhdf5.so;HDF5_sz_LIBRARY_RELEASE-NOTFOUND;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/librt.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so HDF5_DLL-NOTFOUND;HDF5_HL_DLL-NOTFOUND;HDF5_DLL-NOTFOUND;HDF5_HL_DLL-NOTFOUND-- HDF5: /usr/include debug;/usr/lib/libhdf5_hl.so;/usr/lib/libhdf5.so;HDF5_sz_LIBRARY_DEBUG-NOTFOUND;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/librt.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so;optimized;/usr/lib/libhdf5_hl.so;/usr/lib/libhdf5.so;HDF5_sz_LIBRARY_RELEASE-NOTFOUND;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/librt.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so HDF5_DLL-NOTFOUND;HDF5_HL_DLL-NOTFOUND;HDF5_DLL-NOTFOUND;HDF5_HL_DLL-NOTFOUND-- tebd will not be builtCMake Error: The following variables are used in this project, but they are set to NOTFOUND.Please set them or make sure they are set and tested correctly in the CMake files:HDF5_sz_LIBRARY_DEBUG (ADVANCED) linked by target "alps" in directory /root/Cluster/alps-2.1.1-r6176-src-with-boost/alps/src/alpsHDF5_sz_LIBRARY_RELEASE (ADVANCED) linked by target "alps" in directory /root/Cluster/alps-2.1.1-r6176-src-with-boost/alps/src/alps -- Configuring incomplete, errors occurred! But it still says it can't find szip. I am following the instructions on http://alps.comp-phys.org/mediawiki/index.php/Building_ALPS_from_source I am usingcmake -D Boost_ROOT_DIR:PATH=./boost -DCMAKE_INSTALL_PREFIX=/storage/alps/2.1.1 ./alps THANKS IN ADVANCED

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Comp-phys-alps-users August 2013