HDF5 runtime error when using mps_optim application with 'optimization' parameter set 'singlesite' on CentOS Linux
Dear all, The application mps_optim works well on OS X system which is installed by dmg package. But on Linux, it threw the following error when I set the 'optimization' parameter as 'singlesite': ********************************************************************************* terminate called after throwing an instance of 'alps::hdf5::archive_error' what(): HDF5 error: -1 #0 ../../hdf5-1.10.1/src/H5D.c line 145 in H5Dcreate2(): unable to create dataset #1 ../../hdf5-1.10.1/src/H5Dint.c line 490 in H5D__create_named(): unable to create and link to dataset #2 ../../hdf5-1.10.1/src/H5L.c line 1695 in H5L_link_object(): unable to create new link to object #3 ../../hdf5-1.10.1/src/H5L.c line 1939 in H5L_create_real(): can't insert link #4 ../../hdf5-1.10.1/src/H5Gtraverse.c line 867 in H5G_traverse(): internal path traversal failed #5 ../../hdf5-1.10.1/src/H5Gtraverse.c line 639 in H5G_traverse_real(): traversal operator failed #6 ../../hdf5-1.10.1/src/H5L.c line 1731 in H5L_link_cb(): name already exists In /tmp/alps-2.3.0-src-with-boost/alps/src/alps/hdf5/archive.cpp on 133 in resource /opt/alps/lib/libalps.so.2(_ZN4alps4hdf56detail11check_errorEl+0x121) [0x7f44c5184db1] /opt/alps/lib/libalps.so.2(_ZNK4alps4hdf57archive5writeESsPKdSt6vectorImSaImEES6_S6_+0x168c) [0x7f44c526ddec] mps_optim(_ZN4alps4hdf54saveIdSt6vectorIdSaIdEEEEvRNS0_7archiveERKSsRKNS_7numeric6matrixIT_T0_EES2_ImSaImEESH_SH_+0x2bb) [0x51c7bb] mps_optim(_ZN4alps4hdf54saveINS_7numeric6matrixIdSt6vectorIdSaIdEEEESaIS7_EEEvRNS0_7archiveERKSsRKS4_IT_T0_ES4_ImSaImEESJ_SJ_+0x2e1) [0x51ce01] mps_optim(_ZN4alps4hdf5lsIRKSt6vectorINS_7numeric6matrixIdS2_IdSaIdEEEESaIS7_EEEEN5boost10disable_ifINS0_20has_complex_elementsINS_6detail10remove_cvrIT_E4typeEEERNS0_7archiveEE4typeESM_RKNS0_6detail14make_pvp_proxyISH_EE+0x6e) [0x51d3ae] mps_optim(_ZNK12block_matrixIN4alps7numeric6matrixIdSt6vectorIdSaIdEEEE12NU1_templateILi6EiEE4saveINS0_4hdf57archiveEEEvRT_+0x251) [0x571241] mps_optim(_ZN4alps4hdf54saveI12block_matrixINS_7numeric6matrixIdSt6vectorIdSaIdEEEE12NU1_templateILi6EiEEEEvRNS0_7archiveERKSsRKT_S5_ImSaImEESK_SK_+0xb2) [0x571492] mps_optim(_ZN4alps4hdf5lsIRK12block_matrixINS_7numeric6matrixIdSt6vectorIdSaIdEEEE12NU1_templateILi6EiEEEEN5boost10disable_ifINS0_20has_complex_elementsINS_6detail10remove_cvrIT_E4typeEEERNS0_7archiveEE4typeESO_RKNS0_6detail14make_pvp_proxyISJ_EE+0x6e) [0x57188e] mps_optim(_ZNK9MPSTensorIN4alps7numeric6matrixIdSt6vectorIdSaIdEEEE12NU1_templateILi6EiEE4saveINS0_4hdf57archiveEEEvRT_+0x158) [0x571a58] mps_optim(_ZN4alps4hdf54saveI9MPSTensorINS_7numeric6matrixIdSt6vectorIdSaIdEEEE12NU1_templateILi6EiEEEEvRNS0_7archiveERKSsRKT_S5_ImSaImEESK_SK_+0xb2) [0x571be2] mps_optim(_ZN4alps4hdf5lsIRK9MPSTensorINS_7numeric6matrixIdSt6vectorIdSaIdEEEE12NU1_templateILi6EiEEEEN5boost10disable_ifINS0_20has_complex_elementsINS_6detail10remove_cvrIT_E4typeEEERNS0_7archiveEE4typeESO_RKNS0_6detail14make_pvp_proxyISJ_EE+0x6e) [0x571fde] mps_optim() [0x47da4b] /usr/lib64/libgomp.so.1(+0x16435) [0x7f44c249e435] /usr/lib64/libpthread.so.0(+0x7e25) [0x7f44c389ae25] /usr/lib64/libc.so.6(clone+0x6d) [0x7f44c1fa734d] ********************************************************************************* The error is always thrown after the first sweep procedure,i.e., the beginning of the second sweep procedure. I built the ALPS from source code without met any error. So anyone has any ideas? Thanks a lot! Best regards, Rongyang Sun
Dear all, I have solved the problem by reinstalling ALPS with hdf5 v1.8.12. Maybe ALPS not supports hdf5 v1.10, ALPS Core project also met the same problem: https://github.com/ALPSCore/ALPSCore/wiki/Known-problems-and-workarounds#som... Best regards, Rongyang Sun ________________________________ From: Comp-phys-alps-users <comp-phys-alps-users-bounces@lists.phys.ethz.ch> on behalf of Rongyang Sun <sun-rongyang@outlook.com> Sent: Tuesday, November 14, 2017 4:23:47 PM To: comp-phys-alps-users@lists.phys.ethz.ch Subject: [ALPS-users] HDF5 runtime error when using mps_optim application with 'optimization' parameter set 'singlesite' on CentOS Linux Dear all, The application mps_optim works well on OS X system which is installed by dmg package. But on Linux, it threw the following error when I set the 'optimization' parameter as 'singlesite': ********************************************************************************* terminate called after throwing an instance of 'alps::hdf5::archive_error' what(): HDF5 error: -1 #0 ../../hdf5-1.10.1/src/H5D.c line 145 in H5Dcreate2(): unable to create dataset #1 ../../hdf5-1.10.1/src/H5Dint.c line 490 in H5D__create_named(): unable to create and link to dataset #2 ../../hdf5-1.10.1/src/H5L.c line 1695 in H5L_link_object(): unable to create new link to object #3 ../../hdf5-1.10.1/src/H5L.c line 1939 in H5L_create_real(): can't insert link #4 ../../hdf5-1.10.1/src/H5Gtraverse.c line 867 in H5G_traverse(): internal path traversal failed #5 ../../hdf5-1.10.1/src/H5Gtraverse.c line 639 in H5G_traverse_real(): traversal operator failed #6 ../../hdf5-1.10.1/src/H5L.c line 1731 in H5L_link_cb(): name already exists In /tmp/alps-2.3.0-src-with-boost/alps/src/alps/hdf5/archive.cpp on 133 in resource /opt/alps/lib/libalps.so.2(_ZN4alps4hdf56detail11check_errorEl+0x121) [0x7f44c5184db1] /opt/alps/lib/libalps.so.2(_ZNK4alps4hdf57archive5writeESsPKdSt6vectorImSaImEES6_S6_+0x168c) [0x7f44c526ddec] mps_optim(_ZN4alps4hdf54saveIdSt6vectorIdSaIdEEEEvRNS0_7archiveERKSsRKNS_7numeric6matrixIT_T0_EES2_ImSaImEESH_SH_+0x2bb) [0x51c7bb] mps_optim(_ZN4alps4hdf54saveINS_7numeric6matrixIdSt6vectorIdSaIdEEEESaIS7_EEEvRNS0_7archiveERKSsRKS4_IT_T0_ES4_ImSaImEESJ_SJ_+0x2e1) [0x51ce01] mps_optim(_ZN4alps4hdf5lsIRKSt6vectorINS_7numeric6matrixIdS2_IdSaIdEEEESaIS7_EEEEN5boost10disable_ifINS0_20has_complex_elementsINS_6detail10remove_cvrIT_E4typeEEERNS0_7archiveEE4typeESM_RKNS0_6detail14make_pvp_proxyISH_EE+0x6e) [0x51d3ae] mps_optim(_ZNK12block_matrixIN4alps7numeric6matrixIdSt6vectorIdSaIdEEEE12NU1_templateILi6EiEE4saveINS0_4hdf57archiveEEEvRT_+0x251) [0x571241] mps_optim(_ZN4alps4hdf54saveI12block_matrixINS_7numeric6matrixIdSt6vectorIdSaIdEEEE12NU1_templateILi6EiEEEEvRNS0_7archiveERKSsRKT_S5_ImSaImEESK_SK_+0xb2) [0x571492] mps_optim(_ZN4alps4hdf5lsIRK12block_matrixINS_7numeric6matrixIdSt6vectorIdSaIdEEEE12NU1_templateILi6EiEEEEN5boost10disable_ifINS0_20has_complex_elementsINS_6detail10remove_cvrIT_E4typeEEERNS0_7archiveEE4typeESO_RKNS0_6detail14make_pvp_proxyISJ_EE+0x6e) [0x57188e] mps_optim(_ZNK9MPSTensorIN4alps7numeric6matrixIdSt6vectorIdSaIdEEEE12NU1_templateILi6EiEE4saveINS0_4hdf57archiveEEEvRT_+0x158) [0x571a58] mps_optim(_ZN4alps4hdf54saveI9MPSTensorINS_7numeric6matrixIdSt6vectorIdSaIdEEEE12NU1_templateILi6EiEEEEvRNS0_7archiveERKSsRKT_S5_ImSaImEESK_SK_+0xb2) [0x571be2] mps_optim(_ZN4alps4hdf5lsIRK9MPSTensorINS_7numeric6matrixIdSt6vectorIdSaIdEEEE12NU1_templateILi6EiEEEEN5boost10disable_ifINS0_20has_complex_elementsINS_6detail10remove_cvrIT_E4typeEEERNS0_7archiveEE4typeESO_RKNS0_6detail14make_pvp_proxyISJ_EE+0x6e) [0x571fde] mps_optim() [0x47da4b] /usr/lib64/libgomp.so.1(+0x16435) [0x7f44c249e435] /usr/lib64/libpthread.so.0(+0x7e25) [0x7f44c389ae25] /usr/lib64/libc.so.6(clone+0x6d) [0x7f44c1fa734d] ********************************************************************************* The error is always thrown after the first sweep procedure,i.e., the beginning of the second sweep procedure. I built the ALPS from source code without met any error. So anyone has any ideas? Thanks a lot! Best regards, Rongyang Sun
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Rongyang Sun