Executables should be found in /home/cces/ALPS/alps-2.3.0-src-with-boost/alps/ALPSinstall/bin/ since you specified CMAKE_INSTALL_PREFIX as /home/cces/ALPS/alps-2.3.0-src-with-boost/alps/ALPSinstall.
Synge
2018/07/20 15:40、S Baidya santubaidya2009@gmail.comのメール:
Thank you Rongyang. I did again build this time.
(1) first sudo /usr/local/bin/cmake -DALPS_BUILD_FORTRAN=ON -DCMAKE_INSTALL_PREFIX=/home/cces/ALPS/alps-2.3.0-src-with-boost/alps/ALPSinstall -DBoost_ROOT_DIR:PATH=/home/cces/ALPS/alps-2.3.0-src-with-boost/boost /home/cces/ALPS/alps-2.3.0-src-with-boost/alps It worked fine
(2) Then sudo make
(3) Then sudo make test, one error found
The following tests FAILED: 145 - python_pyhdf5io (Failed) Errors while running CTest Makefile:140: recipe for target 'test' failed make: *** [test] Error 8
So I proceed to next step
(4) then sudo make install and it worked fine no error.
Now if I cannot see where are the executables? If I type alpspython and then import pyalps it cannot even find pyalps.
Can you please tell me what should I do to run alps examples using python successfully.
Thanks,
Santu
On 20 July 2018 at 12:06, Rongyang Sun sun-rongyang@outlook.com wrote: Dear Santu,
cd to your build fold and run `make test` to see what happens. I think you may miss some cmake configurations. Use `ccmake .` to set these variables.
Best, Rongyang
From: Comp-phys-alps-users comp-phys-alps-users-bounces@lists.phys.ethz.ch on behalf of S Baidya santubaidya2009@gmail.com Sent: Friday, July 20, 2018 10:55 To: Synge Todo Cc: comp-phys-alps-users@lists.phys.ethz.ch Subject: Re: [ALPS-users] Problem in installing ALPS code in Ubuntu
Although I build the alps without any error I do not find any bin directory holding alps executable. Further, there is only alpspython executable in the bin directory.
When I type alpspython and import pyalps it does not find it.
Can you please tell me what is wrong with my installation. What other things are necessary to install.
Thanks,
Santu
On 20 July 2018 at 11:17, S Baidya santubaidya2009@gmail.com wrote: Thank you. It seems to build now.
CMake Deprecation Warning at CMakeLists.txt:132 (cmake_policy): The OLD behavior for policy CMP0042 will be removed from a future version of CMake.
The cmake-policies(7) manual explains that the OLD behaviors of all policies are deprecated and that a policy should be set to OLD only under specific short-term circumstances. Projects should be ported to the NEW behavior and not rely on setting a policy to OLD.
-- The C compiler identification is GNU 5.5.0 -- The CXX compiler identification is GNU 5.5.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Compiler version: c++ (Ubuntu 5.5.0-12ubuntu1~16.04) 5.5.0 20171010 -- Build type: Release -- Python interpreter /usr/bin/python -- Python interpreter ok : version 2.7.12 -- PYTHON_INCLUDE_DIRS = /usr/include/python2.7 -- PYTHON_NUMPY_INCLUDE_DIR = /home/cces/.local/lib/python2.7/site-packages/numpy/core/include -- PYTHON_SITE_PKG = /usr/lib/python2.7/dist-packages -- PYTHON_LIBRARY = /usr/lib/python2.7/config-x86_64-linux-gnu/libpython2.7.so -- PYTHON_EXTRA_LIBS =-L/usr/lib -lz -lpthread -ldl -lutil -Wl,-Bsymbolic-functions -Wl,-z,relro -- PYTHON_LINK_FOR_SHARED = -Xlinker -export-dynamic -Wl,-O1 -Wl,-Bsymbolic-functions -- ALPS version: 2.3.0 -- Looking for rpc/rpc.h -- Looking for rpc/rpc.h - found -- Looking for stdarg.h -- Looking for stdarg.h - found -- Looking for sys/stat.h -- Looking for sys/stat.h - found -- Looking for sys/systeminfo.h -- Looking for sys/systeminfo.h - not found -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for unistd.h -- Looking for unistd.h - found -- Looking for windows.h -- Looking for windows.h - not found -- Looking for C++ include valarray -- Looking for C++ include valarray - found -- Looking for Boost Source -- Found Boost Source: /home/cces/Downloads/ALPS/alps-2.3.0-src-with-boost/boost -- Boost Version: 1_63_0 -- Adding Boost dir: /home/cces/Downloads/ALPS/alps-2.3.0-src-with-boost/boost -- Found MPI_C: /usr/lib/openmpi/lib/libmpi.so (found version "3.0") -- Found MPI_CXX: /usr/lib/openmpi/lib/libmpi_cxx.so (found version "3.0") -- Found MPI: TRUE (found version "3.0") -- MPI compiler was /usr/bin/mpicxx -- Falling back to CMake provied LAPACK/BLAS detection. -- Looking for sgemm_ -- Looking for sgemm_ - found -- Looking for pthread.h -- Looking for pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - not found -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Found BLAS: /usr/lib/libblas.so -- Looking for cheev_ -- Looking for cheev_ - found -- A library with LAPACK API found. -- SQLite Library: not found -- Found FFTW: /usr/lib/x86_64-linux-gnu/libfftw3.so -- LPSolve Library: not found -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so -- Found SZIP: /usr/lib/x86_64-linux-gnu/libsz.so -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5_hl.so;/usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.so;/usr/lib/x86_64-linux-gnu/libpthread.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so -- Python interpreter /usr/bin/python -- Python interpreter ok : version 2.7.12 -- PYTHON_INCLUDE_DIRS = /usr/include/python2.7 -- PYTHON_NUMPY_INCLUDE_DIR = /home/cces/.local/lib/python2.7/site-packages/numpy/core/include -- PYTHON_SITE_PKG = /usr/lib/python2.7/dist-packages -- PYTHON_LIBRARY = /usr/lib/python2.7/config-x86_64-linux-gnu/libpython2.7.so -- PYTHON_EXTRA_LIBS =-L/usr/lib -lz -lpthread -ldl -lutil -Wl,-Bsymbolic-functions -Wl,-z,relro -- PYTHON_LINK_FOR_SHARED = -Xlinker -export-dynamic -Wl,-O1 -Wl,-Bsymbolic-functions -- Numpy include in /home/cces/.local/lib/python2.7/site-packages/numpy/core/include -- ALPS XML dir is /opt/alps/lib/xml -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5_hl.so;/usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.so;/usr/lib/x86_64-linux-gnu/libpthread.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so;/usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5_hl.so;/usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.so;/usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5_hl.so;/usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.so;/usr/lib/x86_64-linux-gnu/libpthread.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so;/usr/lib/x86_64-linux-gnu/libpthread.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so -- MPS: enabling NU1 symmetry. -- tebd will not be built -- Configuring done -- Generating done -- Build files have been written to: /home/cces/Downloads/ALPS/alps-2.3.0-src-with-boost/alps/build
Hope I can use examples now.
Thanks you,
Santu
On 20 July 2018 at 11:13, Synge Todo wistaria@phys.s.u-tokyo.ac.jp wrote: I think that Boost_ROOT_DIR is not specified correctly. It should be
-DBoost_ROOT_DIR:PATH=/home/cces/Downloads/ALPS/alps-2.3.0-src-with-boost/boost
Best, Synge
2018/07/20 10:49、S Baidya santubaidya2009@gmail.comのメール:
Thank you for your reply. I downloaded alps-2.3.0-src-with-boost.tar.gz and make build and then
sudo /usr/local/bin/cmake -DBoost_ROOT_DIR:PATH=/home/cces/Downloads/boost_1_67_0/boost /home/cces/Downloads/ALPS/alps-2.3.0-src-with-boost/alps/
But it still shows error. Last few lines of cmake are:
CMake Deprecation Warning at CMakeLists.txt:132 (cmake_policy): The OLD behavior for policy CMP0042 will be removed from a future version of CMake.
The cmake-policies(7) manual explains that the OLD behaviors of all policies are deprecated and that a policy should be set to OLD only under specific short-term circumstances. Projects should be ported to the NEW behavior and not rely on setting a policy to OLD.
-- The C compiler identification is GNU 5.5.0 -- The CXX compiler identification is GNU 5.5.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Compiler version: c++ (Ubuntu 5.5.0-12ubuntu1~16.04) 5.5.0 20171010 -- Build type: Release -- Python interpreter /usr/bin/python -- Python interpreter ok : version 2.7.12 -- PYTHON_INCLUDE_DIRS = /usr/include/python2.7 -- PYTHON_NUMPY_INCLUDE_DIR = /home/cces/.local/lib/python2.7/site-packages/numpy/core/include -- PYTHON_SITE_PKG = /usr/lib/python2.7/dist-packages -- PYTHON_LIBRARY = /usr/lib/python2.7/config-x86_64-linux-gnu/libpython2.7.so -- PYTHON_EXTRA_LIBS =-L/usr/lib -lz -lpthread -ldl -lutil -Wl,-Bsymbolic-functions -Wl,-z,relro -- PYTHON_LINK_FOR_SHARED = -Xlinker -export-dynamic -Wl,-O1 -Wl,-Bsymbolic-functions -- ALPS version: 2.3.0 -- Looking for rpc/rpc.h -- Looking for rpc/rpc.h - found -- Looking for stdarg.h -- Looking for stdarg.h - found -- Looking for sys/stat.h -- Looking for sys/stat.h - found -- Looking for sys/systeminfo.h -- Looking for sys/systeminfo.h - not found -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for unistd.h -- Looking for unistd.h - found -- Looking for windows.h -- Looking for windows.h - not found -- Looking for C++ include valarray -- Looking for C++ include valarray - found -- Looking for Boost Source CMake Error at config/FindBoostSrc.cmake:89 (file): file failed to open for reading (No such file or directory):
/home/cces/Downloads/boost_1_67_0/boost/boost/version.hppCall Stack (most recent call first): config/FindBoostForALPS.cmake:75 (find_package) CMakeLists.txt:294 (find_package)
CMake Error at config/FindBoostSrc.cmake:94 (MATH): MATH cannot parse the expression: " / 100000": syntax error, unexpected exp_DIVIDE, expecting exp_PLUS or exp_MINUS or exp_OPENPARENT or exp_NUMBER (2) Call Stack (most recent call first): config/FindBoostForALPS.cmake:75 (find_package) CMakeLists.txt:294 (find_package)
CMake Error at config/FindBoostSrc.cmake:95 (MATH): MATH cannot parse the expression: " / 100 % 1000": syntax error, unexpected exp_DIVIDE, expecting exp_PLUS or exp_MINUS or exp_OPENPARENT or exp_NUMBER (2) Call Stack (most recent call first): config/FindBoostForALPS.cmake:75 (find_package) CMakeLists.txt:294 (find_package)
CMake Error at config/FindBoostSrc.cmake:96 (MATH): MATH cannot parse the expression: " % 100": syntax error, unexpected exp_MOD, expecting exp_PLUS or exp_MINUS or exp_OPENPARENT or exp_NUMBER (2) Call Stack (most recent call first): config/FindBoostForALPS.cmake:75 (find_package) CMakeLists.txt:294 (find_package)
-- Found Boost Source: /home/cces/Downloads/boost_1_67_0/boost -- Boost Version: __ -- Adding Boost dir: /home/cces/Downloads/boost_1_67_0/boost -- Found MPI_C: /usr/lib/openmpi/lib/libmpi.so (found version "3.0") -- Found MPI_CXX: /usr/lib/openmpi/lib/libmpi_cxx.so (found version "3.0") -- Found MPI: TRUE (found version "3.0") -- MPI compiler was /usr/bin/mpicxx -- Falling back to CMake provied LAPACK/BLAS detection. -- Looking for sgemm_ -- Looking for sgemm_ - found -- Looking for pthread.h -- Looking for pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - not found -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Found BLAS: /usr/lib/libblas.so -- Looking for cheev_ -- Looking for cheev_ - found -- A library with LAPACK API found. -- SQLite Library: not found -- Found FFTW: /usr/lib/x86_64-linux-gnu/libfftw3.so -- LPSolve Library: not found -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so -- Found SZIP: /usr/lib/x86_64-linux-gnu/libsz.so -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5_hl.so;/usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.so;/usr/lib/x86_64-linux-gnu/libpthread.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so -- Python interpreter /usr/bin/python -- Python interpreter ok : version 2.7.12 -- PYTHON_INCLUDE_DIRS = /usr/include/python2.7 -- PYTHON_NUMPY_INCLUDE_DIR = /home/cces/.local/lib/python2.7/site-packages/numpy/core/include -- PYTHON_SITE_PKG = /usr/lib/python2.7/dist-packages -- PYTHON_LIBRARY = /usr/lib/python2.7/config-x86_64-linux-gnu/libpython2.7.so -- PYTHON_EXTRA_LIBS =-L/usr/lib -lz -lpthread -ldl -lutil -Wl,-Bsymbolic-functions -Wl,-z,relro -- PYTHON_LINK_FOR_SHARED = -Xlinker -export-dynamic -Wl,-O1 -Wl,-Bsymbolic-functions -- Numpy include in /home/cces/.local/lib/python2.7/site-packages/numpy/core/include -- ALPS XML dir is /opt/alps/lib/xml -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5_hl.so;/usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.so;/usr/lib/x86_64-linux-gnu/libpthread.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so;/usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5_hl.so;/usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.so;/usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5_hl.so;/usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.so;/usr/lib/x86_64-linux-gnu/libpthread.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so;/usr/lib/x86_64-linux-gnu/libpthread.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so -- MPS: enabling NU1 symmetry. -- tebd will not be built -- Configuring incomplete, errors occurred! See also "/home/cces/Downloads/ALPS/alps-2.3.0-src-with-boost/alps/build/CMakeFiles/CMakeOutput.log". See also "/home/cces/Downloads/ALPS/alps-2.3.0-src-with-boost/alps/build/CMakeFiles/CMakeError.log".
I have attached the CMakeError file.
Please tell me why so many difficulties in installing ALPS and what is the solution.
Thanks,
Santu
On 20 July 2018 at 08:48, Synge Todo wistaria@phys.s.u-tokyo.ac.jp wrote: Dear Santu,
Please use ALPS version 2.3.0. Version 2.2 has a bug in checking the version of HDF5 library.
Best, Synge
2018/07/19 17:14、S Baidya santubaidya2009@gmail.comのメール:
Thanks for your reply. I have installed latest CMAKE in the path /usr/local/bin/cmake so I used
/usr/local/bin/cmake -DCMAKE_INSTALL_PREFIX=/home/cces/Downloads/ALPS/alps-2.2.b4-src-with-boost/ /home/cces/Downloads/ALPS/alps-2.2.b4-src-with-boost/alps
But it again gives me error as attached herewith this mail.
The last few lines in the run gives :
-- MKL settings were: -- BLAS_LIBRARY = -- LAPACK_LIBRARY = -L/opt/intel/compilers_and_libraries_2016.4.258/linux/mkl/lib/em64t;-lmkl_lapack;-lmkl;-lguide;-lpthread;-lm -- Falling back to CMake provied LAPACK/BLAS detection. -- Looking for sgemm_ -- Looking for sgemm_ - found -- Found BLAS: /usr/lib/libblas.so -- Looking for cheev_ -- Looking for cheev_ - found -- A library with LAPACK API found. -- SQLite Library: not found -- Found FFTW: /usr/lib/x86_64-linux-gnu/libfftw3.so -- LPSolve Library: not found -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so -- Found SZIP: /usr/lib/x86_64-linux-gnu/libsz.so -- Found HDF5: /home/cces/miniconda3/envs/myenv/lib/libhdf5_hl.so;/home/cces/miniconda3/envs/myenv/lib/libhdf5.so;/usr/lib/x86_64-linux-gnu/librt.so;/usr/lib/x86_64-linux-gnu/libpthread.so;/home/cces/miniconda3/envs/myenv/lib/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so CMake Error at config/FindHDF5.cmake:454 (MESSAGE): The HDF5 include found is too old : version is 1.10.1 while the minimum is 1.8 Call Stack (most recent call first): CMakeLists.txt:415 (find_package)
-- Configuring incomplete, errors occurred!
Please have a look and tell me the actual reason.
Thanks,
Santu
On 19 July 2018 at 16:46, Rongyang Sun sun-rongyang@outlook.com wrote: Dear Santu,
You can follow this guide http://alps.comp-phys.org/mediawiki/index.php/Building_ALPS_from_source to build ALPS from source.
Follow your file structure, after `cd build` you can try:
`cmake -DBoost_ROOT _DIR:PATH=/home/cces/Downloads/ALPS/alps-2.2.b4-src-with-boost/boost /home/cces/Downloads/ALPS/alps-2.2.b4-src-with-boost/alps`
And the dependent libraries need also be installed carefully. If you meet any problems, please let me know.
Best, Rongyang
Building ALPS from source - comp-phys.org Libraries and tools needed to build ALPS. ALPS will need the following libraries and tools in addition to the ALPS sources: CMake version 2.8 or higher as a build system. ... alps.comp-phys.org
From: Comp-phys-alps-users comp-phys-alps-users-bounces@lists.phys.ethz.ch on behalf of S Baidya santubaidya2009@gmail.com Sent: Thursday, July 19, 2018 9:21 To: comp-phys-alps-users@lists.comp-phys.org Subject: [ALPS-users] Problem in installing ALPS code in Ubuntu
Dear ALPS users,
I have downloaded alps-2.2.b4-src-with-boost.tar.gz in my linux pc with Ubuntu. I installed required python packages python2.7.
I then untar by tar -xvzf alps-2.2.b4-src-with-boost.tar.gz
Then mkdir build Then cd build
Then cmake -DCMAKE_INSTALL_PREFIX=/home/cces/Downloads/ALPS/alps-2.2.b4-src-with-boost/alps/ ..
I got an error. I tried different ways too using conda install but it did not work.
So, I thought to build from source in linux as suggested in some websites.
I have attached the Log file of the error.
Can anyone please help me to install the alps in linux pc.
I sent this mail before but I found there was an issue with maximum size of mail. So I have attached only one error file.
Thanking you,
Santu
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